Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   INP96_RS03505 Genome accession   NZ_CP063116
Coordinates   716729..717271 (+) Length   180 a.a.
NCBI ID   WP_070582958.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C146_1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 711729..722271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP96_RS03485 (INP96_03485) - 711755..712600 (-) 846 WP_049373837.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  INP96_RS09430 - 712667..713359 (-) 693 Protein_677 penicillin-binding protein 1A -
  INP96_RS03490 (INP96_03490) - 713435..715285 (-) 1851 Protein_678 penicillin-binding protein 1A -
  INP96_RS03495 (INP96_03495) comA 715385..716227 (+) 843 WP_070582956.1 competence protein ComA Machinery gene
  INP96_RS03500 (INP96_03500) comB 716220..716732 (+) 513 WP_070582957.1 competence protein ComB Machinery gene
  INP96_RS03505 (INP96_03505) comC 716729..717271 (+) 543 WP_070582958.1 competence protein ComC Machinery gene
  INP96_RS03510 (INP96_03510) - 717271..717654 (+) 384 WP_070582959.1 pilus assembly protein PilP -
  INP96_RS03515 (INP96_03515) comE 717656..719038 (+) 1383 WP_197556217.1 type IV pilus secretin PilQ Machinery gene
  INP96_RS03520 (INP96_03520) - 719059..719748 (+) 690 WP_197556218.1 ComF family protein -
  INP96_RS03525 (INP96_03525) nfuA 719862..720446 (+) 585 WP_197556219.1 Fe-S biogenesis protein NfuA -
  INP96_RS03530 (INP96_03530) comM 720490..722019 (-) 1530 WP_197556220.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 21110.14 Da        Isoelectric Point: 6.3356

>NTDB_id=436561 INP96_RS03505 WP_070582958.1 716729..717271(+) (comC) [Haemophilus parainfluenzae strain M1C146_1]
MRNFINELVQKSAQSWFGRWLRLPQMVHAAFWLSALSAVIFLPVFRYVENSNERHRLDAELSLQQQEWDKQEKILQTLRQ
KSDSRQLSPELANSVLPINQHVQALLNGRLRALDLRWDFSQHTLLHLSLQGYFVDLQQFLTALLNDIPTLSLTQLNIEKL
DEEENASITCELIFQLNKDK

Nucleotide


Download         Length: 543 bp        

>NTDB_id=436561 INP96_RS03505 WP_070582958.1 716729..717271(+) (comC) [Haemophilus parainfluenzae strain M1C146_1]
ATGAGGAACTTTATCAATGAGCTTGTTCAAAAAAGTGCACAAAGTTGGTTTGGGAGATGGCTTCGATTACCTCAAATGGT
TCATGCAGCCTTTTGGTTGAGTGCATTAAGTGCGGTCATCTTTTTACCTGTTTTTCGTTACGTTGAAAATAGCAATGAAC
GGCATCGACTTGACGCAGAATTGAGTTTGCAGCAGCAAGAGTGGGATAAACAGGAAAAGATTTTACAAACCTTAAGGCAA
AAGTCAGACAGCCGACAACTTTCTCCAGAATTAGCTAATTCTGTGTTGCCGATTAATCAGCATGTACAGGCGTTGTTAAA
TGGGCGACTTCGAGCGTTGGATTTACGTTGGGATTTTTCTCAACATACTTTGTTGCATTTGTCGTTGCAAGGCTATTTTG
TCGATTTACAGCAATTTTTAACCGCGCTTTTAAACGATATTCCTACACTTTCTTTAACGCAATTAAACATTGAGAAATTA
GATGAAGAGGAAAATGCTTCTATTACATGTGAGTTAATTTTCCAATTAAATAAGGACAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Haemophilus influenzae 86-028NP

40.223

99.444

0.4
  comC Haemophilus influenzae Rd KW20

39.665

99.444

0.394