Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   HF313_RS07505 Genome accession   NZ_CP051166
Coordinates   1724728..1725894 (-) Length   388 a.a.
NCBI ID   WP_126074490.1    Uniprot ID   A0A430HM82
Organism   Massilia atriviolacea strain SOD     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1719728..1730894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF313_RS07495 (HF313_07505) ftsX 1723130..1724050 (-) 921 WP_126074488.1 permease-like cell division protein FtsX -
  HF313_RS07500 (HF313_07510) - 1724047..1724721 (-) 675 WP_126074489.1 cell division ATP-binding protein FtsE -
  HF313_RS07505 (HF313_07515) pilA 1724728..1725894 (-) 1167 WP_126074490.1 signal recognition particle-docking protein FtsY Machinery gene
  HF313_RS07510 (HF313_07520) - 1726005..1726946 (-) 942 WP_126074491.1 MerR family transcriptional regulator -
  HF313_RS07515 (HF313_07525) - 1727250..1728548 (+) 1299 WP_126074492.1 NAD(P)/FAD-dependent oxidoreductase -
  HF313_RS07520 (HF313_07530) - 1728535..1729341 (+) 807 WP_126074493.1 DUF1365 domain-containing protein -
  HF313_RS07525 (HF313_07535) - 1729338..1730570 (+) 1233 WP_126074494.1 cyclopropane-fatty-acyl-phospholipid synthase family protein -

Sequence

Protein


Download         Length: 388 a.a.        Molecular weight: 41140.81 Da        Isoelectric Point: 6.8951

>NTDB_id=436480 HF313_RS07505 WP_126074490.1 1724728..1725894(-) (pilA) [Massilia atriviolacea strain SOD]
MFSFFKKKPPTPDLPPPTPPASAPPAPVVSPVPPVSPVPPAPLADAAPATPAAPSRRYGSTSTFVAPAVPAFGTGLIPET
AERLGNEADSKSSWMARLKAGLSKTSSNLSLLFVGARIDEDLYEELEAALLMSDAGMDATDYLLTELRRKVKEDKLLDAA
AVKAALKVLMTDMLRPLVKPLELGRHEPLVMMIAGVNGAGKTTTIGKLAKHMQKYEQSVLLAAGDTFRAAAREQLMVWGQ
RNNVTVIAQESGDPAAVAFDAVQSGKARKMDVVMVDTAGRLPTQLHLMEELKKIKRVIGKGMDGAPHEVLLVIDGNTGQN
ALAQVKAFDDALQLTGLVITKLDGTAKGGVLAAIARTRPIPVYFIGVGEKIEDLQPFSADEFVEALLG

Nucleotide


Download         Length: 1167 bp        

>NTDB_id=436480 HF313_RS07505 WP_126074490.1 1724728..1725894(-) (pilA) [Massilia atriviolacea strain SOD]
ATGTTTAGTTTTTTTAAGAAAAAACCGCCAACACCCGATCTTCCGCCGCCAACGCCGCCCGCTTCCGCTCCGCCCGCGCC
CGTTGTATCACCAGTGCCACCAGTGTCACCAGTGCCGCCGGCGCCGCTGGCCGACGCCGCGCCAGCCACCCCCGCCGCGC
CATCGCGCCGCTACGGCAGCACCTCGACCTTCGTCGCCCCGGCCGTCCCGGCCTTCGGCACCGGGCTGATTCCCGAAACC
GCCGAACGCCTCGGCAACGAGGCCGACAGCAAGAGTTCCTGGATGGCGCGCCTGAAAGCCGGCCTGTCGAAAACCTCCAG
TAACCTGAGCCTGCTGTTCGTGGGCGCGCGCATCGACGAAGACCTGTACGAGGAACTCGAAGCGGCCCTGCTCATGTCCG
ACGCCGGCATGGACGCCACCGACTACCTGCTCACCGAACTGCGGCGCAAGGTCAAGGAAGACAAGCTGCTCGACGCCGCC
GCCGTCAAGGCCGCGCTCAAGGTGCTCATGACCGACATGCTGCGCCCGCTGGTCAAGCCGCTCGAACTGGGCCGCCACGA
ACCGCTGGTGATGATGATCGCGGGCGTCAACGGCGCCGGCAAGACCACCACCATCGGCAAACTCGCCAAGCACATGCAGA
AGTACGAGCAATCGGTGCTGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCGCGCGAGCAATTGATGGTCTGGGGCCAG
CGCAACAACGTCACCGTGATCGCCCAGGAGTCGGGCGACCCGGCCGCCGTCGCCTTCGACGCCGTGCAGTCGGGCAAGGC
GCGCAAGATGGACGTGGTCATGGTCGACACCGCCGGCCGCCTGCCGACGCAGCTGCACCTGATGGAAGAACTCAAGAAGA
TCAAGCGCGTCATCGGCAAGGGCATGGATGGCGCCCCGCACGAAGTGCTGCTGGTGATCGACGGCAACACCGGCCAGAAC
GCCCTGGCCCAGGTCAAGGCCTTCGACGACGCCTTGCAGCTGACCGGCCTGGTCATCACCAAGCTGGACGGCACCGCCAA
GGGCGGCGTGCTGGCCGCGATCGCCCGCACCCGTCCGATTCCCGTGTACTTCATCGGCGTCGGCGAAAAGATCGAAGACC
TGCAACCGTTCAGCGCCGACGAATTCGTCGAGGCCTTGCTGGGATAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(189-388)

SRP54-type protein, helical bundle domain (SRP54_N)

(115-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A430HM82

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

50.476

100

0.546