Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HF584_RS12030 Genome accession   NZ_CP051165
Coordinates   2501442..2501837 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NGA84b     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2496442..2506837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF584_RS12005 (HF584_10590) - 2497739..2498143 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  HF584_RS12010 (HF584_10580) - 2498667..2498900 (+) 234 WP_000384523.1 DUF1146 family protein -
  HF584_RS12015 (HF584_10575) murA 2499011..2500276 (+) 1266 WP_054190451.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  HF584_RS12020 (HF584_10570) fabZ 2500310..2500750 (+) 441 WP_054190450.1 3-hydroxyacyl-ACP dehydratase FabZ -
  HF584_RS12025 (HF584_10565) - 2500808..2501248 (-) 441 WP_000846746.1 YwpF-like family protein -
  HF584_RS12030 (HF584_10560) ssb 2501442..2501837 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  HF584_RS12035 (HF584_10555) sceD 2502226..2502921 (+) 696 WP_054190448.1 lytic transglycosylase SceD -
  HF584_RS12040 (HF584_10550) tenA 2503308..2503997 (+) 690 WP_054190447.1 thiaminase II -
  HF584_RS12045 (HF584_10545) thiD 2503990..2504820 (+) 831 WP_054190446.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  HF584_RS12050 (HF584_10540) thiM 2504804..2505595 (+) 792 WP_054190445.1 hydroxyethylthiazole kinase -
  HF584_RS12055 (HF584_10535) thiE 2505597..2506238 (+) 642 WP_054190444.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=436467 HF584_RS12030 WP_000932694.1 2501442..2501837(+) (ssb) [Staphylococcus aureus strain NGA84b]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=436467 HF584_RS12030 WP_000932694.1 2501442..2501837(+) (ssb) [Staphylococcus aureus strain NGA84b]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTCGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992