Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   HF584_RS06545 Genome accession   NZ_CP051165
Coordinates   1354035..1354604 (-) Length   189 a.a.
NCBI ID   WP_054190481.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NGA84b     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1349035..1359604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF584_RS06505 (HF584_02360) - 1349510..1350118 (-) 609 WP_054190480.1 class I SAM-dependent methyltransferase -
  HF584_RS06510 (HF584_02355) rplL 1350293..1350661 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  HF584_RS06515 (HF584_02350) rplJ 1350703..1351203 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  HF584_RS06520 (HF584_02345) rplA 1351475..1352167 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  HF584_RS06525 (HF584_02340) rplK 1352375..1352797 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  HF584_RS06530 (HF584_02335) nusG 1352978..1353526 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  HF584_RS06535 (HF584_02330) secE 1353539..1353721 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  HF584_RS06540 (HF584_02325) rpmG 1353777..1353920 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  HF584_RS06545 (HF584_02320) sigH 1354035..1354604 (-) 570 WP_054190481.1 RNA polymerase sigma factor Regulator
  HF584_RS06550 (HF584_02315) - 1354685..1355209 (-) 525 WP_000664738.1 NYN domain-containing protein -
  HF584_RS06555 (HF584_02310) rlmB 1355209..1355955 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  HF584_RS06560 (HF584_02305) - 1355963..1356367 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  HF584_RS06565 (HF584_02300) cysS 1356360..1357760 (-) 1401 WP_054190482.1 cysteine--tRNA ligase -
  HF584_RS06570 (HF584_02295) cysE 1357744..1358391 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23085.90 Da        Isoelectric Point: 9.6015

>NTDB_id=436457 HF584_RS06545 WP_054190481.1 1354035..1354604(-) (sigH) [Staphylococcus aureus strain NGA84b]
MEYDLTTQDSTTKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCKQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=436457 HF584_RS06545 WP_054190481.1 1354035..1354604(-) (sigH) [Staphylococcus aureus strain NGA84b]
TTGGAATATGATTTGACAACTCAAGACAGTACAACCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTAAACAATATAAGCCAAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCTATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

97.884

100

0.979
  sigH Staphylococcus aureus N315

96.825

100

0.968