Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   HF584_RS04660 Genome accession   NZ_CP051165
Coordinates   963950..964936 (-) Length   328 a.a.
NCBI ID   WP_054190362.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NGA84b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 958950..969936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF584_RS04635 (HF584_04230) - 959210..959557 (-) 348 WP_054190359.1 hypothetical protein -
  HF584_RS04640 (HF584_04225) - 959743..960336 (+) 594 WP_054190360.1 CYTH domain-containing protein -
  HF584_RS04645 (HF584_04220) - 960440..960805 (+) 366 WP_000214067.1 truncated hemoglobin YjbI -
  HF584_RS04650 (HF584_04215) yjbH 960828..961634 (+) 807 WP_054190361.1 protease adaptor protein YjbH -
  HF584_RS04655 (HF584_04210) pepF 962094..963902 (-) 1809 WP_070016683.1 oligoendopeptidase F -
  HF584_RS04660 (HF584_04205) coiA 963950..964936 (-) 987 WP_054190362.1 competence protein CoiA family protein Machinery gene
  HF584_RS04665 (HF584_04200) mecA 965057..965776 (-) 720 WP_054190363.1 adaptor protein MecA -
  HF584_RS04670 (HF584_04195) spxA 966147..966542 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  HF584_RS04675 (HF584_04190) trpS 966837..967826 (+) 990 WP_054190364.1 tryptophan--tRNA ligase -
  HF584_RS04680 (HF584_04185) opp4C 967914..968795 (-) 882 WP_001180264.1 oligopeptide ABC transporter permease -
  HF584_RS04685 (HF584_04180) opp4B 968807..969769 (-) 963 WP_054190365.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38854.26 Da        Isoelectric Point: 9.3244

>NTDB_id=436452 HF584_RS04660 WP_054190362.1 963950..964936(-) (coiA) [Staphylococcus aureus strain NGA84b]
MLVALNEEKERVLATTALRKTQYFCPMCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
DIEPFLKEIKQIPDILINNKYVIELQYSPIPYKEILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFDLENKQIYKFHQLQSLGGNKYFAYKTKDCISELFNETPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLLNDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=436452 HF584_RS04660 WP_054190362.1 963950..964936(-) (coiA) [Staphylococcus aureus strain NGA84b]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACGCAATATTTTTGTCCGAT
GTGTGGGAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GATATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAAGAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGGTATAAAGTGAGTTGGTTATTAA
ATGATGTTGATTACTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAACCCAATCACTCGAAAACTT
CATACGTTTGATTTAGAAAATAAGCAAATATATAAATTTCATCAATTACAAAGTTTAGGCGGCAATAAGTATTTTGCGTA
TAAGACGAAAGACTGTATTAGTGAGTTGTTTAATGAGACGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATTAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAACAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTACTAAATGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

92.378

100

0.924
  coiA Staphylococcus aureus N315

92.378

100

0.924