Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   HF584_RS04520 Genome accession   NZ_CP051165
Coordinates   932392..932961 (+) Length   189 a.a.
NCBI ID   WP_000287265.1    Uniprot ID   A0A7U7EXU5
Organism   Staphylococcus aureus strain NGA84b     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 927392..937961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF584_RS04495 (HF584_04375) - 928598..928882 (-) 285 WP_054190345.1 lactococcin 972 family bacteriocin -
  HF584_RS13755 - 929539..929646 (-) 108 WP_323370946.1 hypothetical protein -
  HF584_RS04500 (HF584_04365) - 929897..930499 (-) 603 WP_001033867.1 CPBP family glutamic-type intramembrane protease -
  HF584_RS04505 (HF584_04360) - 930514..930690 (-) 177 WP_000214898.1 YkvS family protein -
  HF584_RS04510 (HF584_04355) - 930889..931875 (+) 987 WP_054190346.1 lipoate--protein ligase -
  HF584_RS04515 (HF584_04350) - 931964..932182 (-) 219 WP_000876826.1 IDEAL domain-containing protein -
  HF584_RS04520 (HF584_04345) comK/comK1 932392..932961 (+) 570 WP_000287265.1 competence protein ComK Regulator
  HF584_RS04535 (HF584_04330) - 933450..934961 (-) 1512 WP_249740059.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  HF584_RS04540 (HF584_04325) - 935233..936549 (+) 1317 WP_054190390.1 ISL3 family transposase -
  HF584_RS04545 (HF584_04320) - 936597..937955 (-) 1359 WP_054190348.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22601.83 Da        Isoelectric Point: 9.6091

>NTDB_id=436451 HF584_RS04520 WP_000287265.1 932392..932961(+) (comK/comK1) [Staphylococcus aureus strain NGA84b]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=436451 HF584_RS04520 WP_000287265.1 932392..932961(+) (comK/comK1) [Staphylococcus aureus strain NGA84b]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
TGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7EXU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

100

100

1
  comK/comK1 Staphylococcus aureus N315

100

100

1