Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   INP98_RS03660 Genome accession   NZ_CP063112
Coordinates   755721..756959 (+) Length   412 a.a.
NCBI ID   WP_049384846.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C149_1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 750721..761959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP98_RS03640 (INP98_03635) - 752019..752855 (-) 837 WP_197570371.1 neutral zinc metallopeptidase -
  INP98_RS03645 (INP98_03640) lysM 753033..753473 (+) 441 WP_014064256.1 peptidoglycan-binding protein LysM -
  INP98_RS03650 (INP98_03645) tig 753687..754985 (+) 1299 WP_197570372.1 trigger factor -
  INP98_RS03655 (INP98_03650) clpP 755130..755711 (+) 582 WP_005695224.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  INP98_RS03660 (INP98_03655) clpX 755721..756959 (+) 1239 WP_049384846.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  INP98_RS03665 (INP98_03660) secE 757081..757497 (+) 417 WP_049372690.1 preprotein translocase subunit SecE -
  INP98_RS03670 (INP98_03665) nusG 757499..758056 (+) 558 WP_005695227.1 transcription termination/antitermination protein NusG -
  INP98_RS03675 (INP98_03670) rplK 758228..758656 (+) 429 WP_005695228.1 50S ribosomal protein L11 -
  INP98_RS03680 (INP98_03675) rplA 758661..759350 (+) 690 WP_005695230.1 50S ribosomal protein L1 -
  INP98_RS03685 (INP98_03680) - 759506..760651 (-) 1146 WP_197570373.1 iron-containing alcohol dehydrogenase -
  INP98_RS03690 (INP98_03685) - 760700..761881 (-) 1182 WP_197570374.1 glutathionylspermidine synthase family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45622.04 Da        Isoelectric Point: 4.5872

>NTDB_id=436443 INP98_RS03660 WP_049384846.1 755721..756959(+) (clpX) [Haemophilus parainfluenzae strain M1C149_1]
MTTNDNDLHCSFCGREKSEVGKLIAGTDGYICNECIELCHSMLEDSGEIETPSELAVEEKLPTPHEIRAHLDDYVIGQDY
AKKVLSVAVYNHYKRLRTNHQSNDVELGKSNILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQ
KLLQNCDYDTEKAEQGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEMLKVDTSKI
LFICGGAFAGLDKIIGKRTQTATGIGFDAKVEKEEEKENLSELFRQVEPDDLMKFGLIPEFIGRLPMIAPLSELDEEALI
QILTQPKNALTKQYQALFGLEDVELEFTPEALKAMAKKALERKTGARGLRSIVEAVLLDTMYDLPSIENLQKVIVDEETI
VDNKPPKLEYKN

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=436443 INP98_RS03660 WP_049384846.1 755721..756959(+) (clpX) [Haemophilus parainfluenzae strain M1C149_1]
ATGACAACAAATGATAACGATCTTCACTGTTCTTTCTGCGGAAGAGAAAAAAGTGAAGTAGGTAAATTAATTGCGGGTAC
AGATGGTTATATTTGTAACGAGTGTATCGAGCTTTGCCACAGTATGTTGGAAGACAGTGGTGAAATCGAAACACCTAGCG
AACTGGCAGTTGAAGAAAAATTACCAACCCCACACGAAATTCGTGCGCACTTAGATGATTATGTGATTGGGCAAGATTAT
GCGAAAAAAGTCTTGTCAGTGGCGGTTTATAATCACTATAAACGTTTACGTACGAACCACCAAAGCAATGATGTGGAATT
AGGTAAAAGTAACATCTTGTTAATTGGTCCAACAGGTAGCGGTAAAACCTTATTAGCTCAAACCTTAGCGCGTCGTTTGA
ATGTGCCTTTTGCTATGGCCGATGCGACGACGTTAACTGAAGCCGGTTATGTAGGCGAAGATGTGGAAAATGTTCTGCAA
AAATTATTGCAAAACTGCGATTACGATACGGAAAAAGCAGAGCAGGGCATTATCTATATTGATGAAATTGATAAAATCAG
CCGTAAATCAGAAGGTGCGTCTATTACCCGTGATGTGTCGGGTGAAGGTGTGCAACAAGCCTTGTTGAAATTAATTGAAG
GTACTATTGCATCTGTGCCTCCACAAGGTGGACGTAAGCACCCTCAACAAGAAATGTTAAAAGTGGATACCTCAAAAATC
CTCTTTATTTGTGGCGGGGCATTTGCCGGCTTAGATAAAATTATCGGTAAGCGTACACAAACAGCTACCGGAATTGGCTT
TGATGCGAAAGTAGAGAAAGAAGAAGAGAAAGAAAATCTTTCTGAATTATTCCGTCAAGTTGAGCCGGATGATTTAATGA
AATTTGGTTTGATTCCAGAGTTTATTGGTCGTCTTCCTATGATTGCGCCATTAAGCGAATTAGATGAAGAAGCGTTGATT
CAGATCCTGACTCAACCGAAAAATGCACTGACCAAACAATATCAAGCATTATTTGGCTTAGAAGATGTAGAGCTTGAATT
TACACCAGAAGCATTGAAAGCGATGGCGAAAAAAGCCCTTGAACGTAAAACCGGTGCGCGTGGTTTACGCTCAATCGTTG
AGGCTGTATTGTTAGATACGATGTATGATTTACCTTCAATCGAAAACTTGCAAAAAGTGATTGTGGATGAAGAAACCATC
GTTGATAACAAACCACCAAAACTTGAATATAAAAATTAA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(109-308)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(314-391)

ClpX C4-type zinc finger (zf-C4_ClpX)

(8-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

58.191

99.272

0.578
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.138

96.845

0.534