Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   HCM98_RS06055 Genome accession   NZ_CP051013
Coordinates   1162556..1164382 (+) Length   608 a.a.
NCBI ID   WP_029437845.1    Uniprot ID   -
Organism   Bacillus tropicus strain LM1212-DB     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1157556..1169382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCM98_RS06035 (HCM98_06040) - 1157878..1158552 (-) 675 WP_029437842.1 TerC family protein -
  HCM98_RS06040 (HCM98_06045) mecA 1158880..1159563 (+) 684 WP_000350711.1 adaptor protein MecA Regulator
  HCM98_RS06045 (HCM98_06050) - 1159636..1161180 (+) 1545 WP_029437843.1 cardiolipin synthase -
  HCM98_RS06050 (HCM98_06055) - 1161261..1162505 (+) 1245 WP_029437844.1 competence protein CoiA family protein -
  HCM98_RS06055 (HCM98_06060) pepF 1162556..1164382 (+) 1827 WP_029437845.1 oligoendopeptidase F Regulator
  HCM98_RS06060 (HCM98_06065) - 1164502..1164675 (-) 174 WP_002051510.1 hypothetical protein -
  HCM98_RS06065 (HCM98_06070) - 1164905..1165798 (-) 894 WP_000360642.1 ClpXP adapter SpxH family protein -
  HCM98_RS06070 (HCM98_06075) - 1165798..1166196 (-) 399 WP_000043380.1 hypothetical protein -
  HCM98_RS06075 (HCM98_06080) - 1166375..1166953 (-) 579 WP_029437846.1 CYTH domain-containing protein -
  HCM98_RS06080 (HCM98_06085) - 1167098..1167469 (+) 372 WP_029437847.1 hypothetical protein -
  HCM98_RS06085 (HCM98_06090) - 1167500..1168138 (+) 639 WP_001081480.1 GTP pyrophosphokinase family protein -
  HCM98_RS06090 (HCM98_06095) - 1168157..1168954 (+) 798 WP_029437848.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70322.63 Da        Isoelectric Point: 4.6458

>NTDB_id=436060 HCM98_RS06055 WP_029437845.1 1162556..1164382(+) (pepF) [Bacillus tropicus strain LM1212-DB]
MSEQNTAKTLPDRNEIEESSTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSANNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDMLLKSLHVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHMIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALIIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=436060 HCM98_RS06055 WP_029437845.1 1162556..1164382(+) (pepF) [Bacillus tropicus strain LM1212-DB]
ATGTCTGAACAAAACACAGCAAAAACATTACCAGATCGTAACGAGATTGAAGAATCAAGTACTTGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAAAAAGAATTCCAAGCTATTAAAGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGATTCTGCGAACAATTTACTTGAAGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCATTAAATGACCGCGCGACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCATATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACACTGCAAACATTTTTAA
AAGAAAATAGAGACTTAAGTGTATATGAACATGCATTAGAAGAAATTACGCGCCAACGTCCGCACGTATTATCTGAAGCG
GAAGAGGCTTTATTAGCAGAAGCATCTGAAGTAATGAGTGCGTCAAGTAATACATTTGGTATGTTGAATAATGCGGATTT
AAAATTCCCATCTATTAAAGGTGAGGATGGAGAAGAAGTAGAAATCACACATGGTCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTGCGTGAAGATGCATTCAAAGCTGTATATGAAACGTACGGAAAATATAAGAACACATTTGCAAGTACG
TTAAGCGGAGCTGTGAAGCGTAATAATTTCAATGCGCGCGTTCGCAAATATGATTCTGCACGTCAAGCTGCATTAAGTAA
TAATAATATTCCTGAAGCGGTGTACGATCAACTTGTTGAATCTGTAAATGATAATTTACACTTGCTACATCGTTACATTG
ATATTCGTAAGCGTGCACTAGGGCTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AACGTGAAGTATGAAGAAGCGCAAGACATGTTATTAAAGTCTTTACATGTACTTGGGGATGAGTATGTTGATATTTTGAA
AGAAGCATATGAAAATCGCTGGGTAGATGTATATGAGAATAAAGGAAAACGAAGCGGAGCATATTCATCTGGTGCATATG
GAACAAATCCTTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCCCATGAATTTGGTCATTCT
GTACATAGTTACTACACAAGAAAAACGCAGCCGCACGTATACGGTGACTATTCAATCTTTGTTGCGGAAGTAGCATCAAC
TTGTAATGAAGCGTTGCTAAACGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATACTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTCGCAGAGTTTGAGCATATGATTCATAAGAAAGTACAA
GAGGGACATGCGGTTACACCAGACATGTTAACGGAAATCTACTACGATTTAAATAAGAAATATTTCGGTGATGCTTTAAT
AATTGATGAAGAAATTGGTTTAGAGTGGTCTCGTATTCCGCACTTCTACTACAACTATTACGTATACCAATACGCAACAG
GATTTAGTGCAGCAACAGCTCTATCTAAACAAATTTTAGAAGAAGGGCAACCAGCAGTAGAACGTTACATTAATGAGTTC
TTAAAAGCAGGAAGCTCGGATTACCCAATTGAAGTGCTGAAAAAAGCTGGAGTAGATATGGCATCTCCAGAACCGGTAAA
AGAAGCATTGCAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCTTTATTATTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.253

97.533

0.49