Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   HEQ83_RS16495 Genome accession   NZ_CP051011
Coordinates   3367627..3368316 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain BY6     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3362627..3373316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEQ83_RS16460 - 3362825..3363307 (-) 483 WP_003151394.1 flagellar protein FlgN -
  HEQ83_RS16465 flgM 3363322..3363588 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  HEQ83_RS16470 - 3363658..3364077 (-) 420 WP_069473598.1 TIGR03826 family flagellar region protein -
  HEQ83_RS16475 comFC 3364151..3364840 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  HEQ83_RS16480 - 3364846..3365130 (-) 285 WP_057080260.1 late competence development ComFB family protein -
  HEQ83_RS16485 comFA 3365188..3366573 (-) 1386 WP_069473599.1 DEAD/DEAH box helicase Machinery gene
  HEQ83_RS16490 - 3366681..3367529 (-) 849 WP_043867471.1 DegV family protein -
  HEQ83_RS16495 degU 3367627..3368316 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HEQ83_RS16500 degS 3368393..3369556 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  HEQ83_RS16505 - 3369779..3370426 (+) 648 WP_043867472.1 YigZ family protein -
  HEQ83_RS16510 - 3370431..3371645 (+) 1215 WP_043867473.1 LCP family protein -
  HEQ83_RS16515 - 3371735..3372811 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=436037 HEQ83_RS16495 WP_003219701.1 3367627..3368316(-) (degU) [Bacillus velezensis strain BY6]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=436037 HEQ83_RS16495 WP_003219701.1 3367627..3368316(-) (degU) [Bacillus velezensis strain BY6]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1