Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   HEQ83_RS16485 Genome accession   NZ_CP051011
Coordinates   3365188..3366573 (-) Length   461 a.a.
NCBI ID   WP_069473599.1    Uniprot ID   -
Organism   Bacillus velezensis strain BY6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3360188..3371573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEQ83_RS16450 flgL 3360363..3361280 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  HEQ83_RS16455 flgK 3361292..3362809 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  HEQ83_RS16460 - 3362825..3363307 (-) 483 WP_003151394.1 flagellar protein FlgN -
  HEQ83_RS16465 flgM 3363322..3363588 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  HEQ83_RS16470 - 3363658..3364077 (-) 420 WP_069473598.1 TIGR03826 family flagellar region protein -
  HEQ83_RS16475 comFC 3364151..3364840 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  HEQ83_RS16480 - 3364846..3365130 (-) 285 WP_057080260.1 late competence development ComFB family protein -
  HEQ83_RS16485 comFA 3365188..3366573 (-) 1386 WP_069473599.1 DEAD/DEAH box helicase Machinery gene
  HEQ83_RS16490 - 3366681..3367529 (-) 849 WP_043867471.1 DegV family protein -
  HEQ83_RS16495 degU 3367627..3368316 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HEQ83_RS16500 degS 3368393..3369556 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  HEQ83_RS16505 - 3369779..3370426 (+) 648 WP_043867472.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52573.06 Da        Isoelectric Point: 10.0979

>NTDB_id=436036 HEQ83_RS16485 WP_069473599.1 3365188..3366573(-) (comFA) [Bacillus velezensis strain BY6]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHCIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTLLYSWNQAPENRWKPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQELQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=436036 HEQ83_RS16485 WP_069473599.1 3365188..3366573(-) (comFA) [Bacillus velezensis strain BY6]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATTGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATTATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGCACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAGAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.261

99.783

0.631