Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   IL989_RS12865 Genome accession   NZ_CP062984
Coordinates   2624587..2626359 (-) Length   590 a.a.
NCBI ID   WP_088613226.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2619587..2631359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS12845 (IL989_12845) sdhA 2619800..2621560 (-) 1761 WP_013353100.1 succinate dehydrogenase flavoprotein subunit -
  IL989_RS12850 (IL989_12850) sdhC 2621594..2622202 (-) 609 WP_003152571.1 succinate dehydrogenase cytochrome B558 -
  IL989_RS12855 (IL989_12855) - 2622498..2622944 (+) 447 WP_013353101.1 YslB family protein -
  IL989_RS12860 (IL989_12860) - 2622991..2624220 (-) 1230 WP_013353102.1 aspartate kinase -
  IL989_RS12865 (IL989_12865) uvrC 2624587..2626359 (-) 1773 WP_088613226.1 excinuclease ABC subunit UvrC Machinery gene
  IL989_RS12870 (IL989_12870) trxA 2626505..2626819 (-) 315 WP_003152560.1 thioredoxin -
  IL989_RS12875 (IL989_12875) - 2626971..2628461 (-) 1491 WP_013353104.1 alpha-N-arabinofuranosidase -
  IL989_RS12880 (IL989_12880) - 2628675..2629652 (-) 978 WP_014470796.1 electron transfer flavoprotein subunit alpha/FixB family protein -
  IL989_RS12885 (IL989_12885) - 2629684..2630457 (-) 774 WP_013353106.1 electron transfer flavoprotein subunit beta/FixA family protein -
  IL989_RS12890 (IL989_12890) - 2630471..2631250 (-) 780 WP_013353107.1 enoyl-CoA hydratase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68408.25 Da        Isoelectric Point: 9.5501

>NTDB_id=435976 IL989_RS12865 WP_088613226.1 2624587..2626359(-) (uvrC) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MNKQLKEKLALLPDQPGCYLMKDRQKTVIYVGKAKVLKNRVRSYFTGSHDAKTQRLVTEIEDFEYIVTSSNLEALILEMN
LIKKYDPKYNVMLKDDKTYPFIKITHERHPRLIVTRNVKKDKGRYFGPYPNVQAARETKKLLDRLYPLRKCSKLPDRVCL
YYHLGQCLAPCVKDISEETNRELVEDITRFLKGGHNEVKKELEEKMTEAAEKLEFERAKEFRDQLAHIESTMEKQKMTMN
DLLDRDVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEADEEFLTYIGQFYSKNNHFLPKEILVPDSVDRDMISEL
LETAVHQPKKGPKKELLLLAHKNAKIALREKFSLIERDEERSIGAAERLGEALNIYTPHRIEAFDNSNIQGTNPVSAMIV
FIDGKPNKKEYRKYKIKTVTGPDDYGSMREVVRRRYSRVLRENLPLPDLIIIDGGKGQINAARDVLENELGLDVPVAGLA
KDDKHRTSNLLIGDPLEPVFLERNSQEFYLLQRIQDEVHRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSV
KKMKEASLDDIKKAGVPAAAAQMLFEKLKK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=435976 IL989_RS12865 WP_088613226.1 2624587..2626359(-) (uvrC) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGAATAAACAACTGAAAGAAAAGCTGGCCCTCCTTCCCGATCAGCCGGGCTGTTATTTAATGAAAGACCGTCAAAAAAC
AGTCATCTACGTGGGGAAAGCGAAGGTGCTGAAAAACAGGGTGCGATCCTATTTCACCGGTTCTCACGACGCAAAAACCC
AAAGGCTTGTGACGGAGATTGAGGACTTTGAATATATCGTGACCTCCTCCAATCTTGAAGCGCTTATTTTGGAAATGAAT
CTGATTAAAAAATACGATCCGAAATACAATGTCATGCTGAAAGATGACAAAACCTATCCCTTTATTAAAATCACCCATGA
ACGCCATCCGCGGCTTATTGTCACCCGGAATGTCAAAAAAGACAAAGGGCGCTATTTCGGCCCGTACCCGAATGTGCAGG
CGGCGCGGGAAACGAAAAAACTGCTGGACCGCCTATACCCGCTCAGGAAGTGCTCGAAGCTTCCGGACCGCGTCTGTCTT
TATTATCATCTCGGACAATGCCTCGCTCCTTGTGTTAAAGATATTTCTGAGGAGACAAATCGCGAGCTGGTTGAAGATAT
CACCCGTTTTTTAAAGGGAGGGCATAACGAGGTCAAAAAAGAGCTTGAAGAGAAAATGACAGAGGCGGCGGAAAAGCTTG
AATTTGAACGGGCTAAAGAATTCCGCGATCAGCTTGCTCACATCGAATCGACGATGGAGAAGCAGAAAATGACCATGAAT
GACCTTTTGGACCGCGATGTGTTTGCTTATGCCTACGATAAAGGCTGGATGTGCGTCCAGGTCTTTTTCATACGCCAGGG
AAAGCTGATTGAACGCGATGTCAGCATGTTTCCGATGTATCAGGAAGCGGATGAAGAATTTCTGACCTATATCGGCCAGT
TCTATTCTAAAAACAATCACTTTCTGCCTAAAGAAATCCTGGTGCCTGACAGCGTGGACAGGGACATGATCAGCGAGCTT
TTGGAAACCGCCGTGCATCAGCCGAAAAAAGGCCCGAAAAAAGAGCTGCTTTTGCTTGCGCACAAAAATGCGAAAATCGC
TCTGCGGGAAAAATTCTCATTAATCGAGCGGGATGAGGAACGGTCAATCGGTGCTGCCGAACGTCTCGGTGAGGCGCTGA
ACATTTACACGCCGCATCGGATTGAAGCGTTTGACAACTCCAATATTCAAGGCACAAACCCTGTGTCGGCCATGATTGTC
TTTATTGACGGTAAGCCCAATAAAAAGGAATACCGCAAATATAAAATTAAAACCGTAACAGGGCCTGATGATTACGGCTC
TATGAGGGAAGTCGTCAGAAGAAGATATTCGAGGGTGCTCCGCGAAAATCTCCCGCTGCCGGATTTAATCATCATTGACG
GCGGAAAAGGACAGATTAATGCGGCGCGCGACGTGCTCGAAAATGAGCTCGGCCTTGATGTCCCTGTAGCGGGATTGGCG
AAGGATGATAAACACCGAACATCCAACCTTTTGATCGGCGATCCGCTTGAACCGGTGTTTCTGGAGCGGAACAGCCAGGA
ATTTTACCTGCTTCAGCGCATTCAGGACGAAGTTCACCGCTTTGCAATCAGTTTTCACAGGCAGATCCGGGGAAAAAGCG
CCTTTCAATCCGTTTTGGATGATATCCCGGGCATCGGCGAAAAACGCAAAAAAATGCTCTTAAAGCATTTCGGATCCGTC
AAAAAGATGAAGGAAGCAAGCCTTGACGATATTAAAAAAGCCGGTGTGCCGGCTGCGGCGGCTCAGATGCTGTTTGAAAA
ATTGAAAAAATAG

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-523)

UvrB/uvrC motif (UVR)

(197-229)

GIY-YIG catalytic domain (GIY-YIG)

(16-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

59.524

99.661

0.593
  uvrC Streptococcus pneumoniae R6

59.184

99.661

0.59
  uvrC Streptococcus pneumoniae D39

59.184

99.661

0.59