Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   IL989_RS07355 Genome accession   NZ_CP062984
Coordinates   1475156..1476178 (+) Length   340 a.a.
NCBI ID   WP_013352157.1    Uniprot ID   A0A9P1JGM5
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1470156..1481178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS07320 (IL989_07320) - 1470518..1470757 (+) 240 WP_003154475.1 YlbE-like family protein -
  IL989_RS07325 (IL989_07325) ylbF 1470829..1471278 (+) 450 WP_193351743.1 YlbF family regulator Regulator
  IL989_RS07330 (IL989_07330) - 1471337..1471609 (+) 273 WP_013352153.1 YlbG family protein -
  IL989_RS07335 (IL989_07335) rsmD 1471908..1472462 (+) 555 WP_193351744.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  IL989_RS07340 (IL989_07340) coaD 1472467..1472949 (+) 483 WP_013352154.1 pantetheine-phosphate adenylyltransferase -
  IL989_RS07345 (IL989_07345) ylbJ 1472967..1474193 (-) 1227 WP_193351745.1 sporulation integral membrane protein YlbJ -
  IL989_RS07350 (IL989_07350) - 1474371..1475150 (+) 780 WP_193351746.1 patatin-like phospholipase family protein -
  IL989_RS07355 (IL989_07355) sepM 1475156..1476178 (+) 1023 WP_013352157.1 SepM family pheromone-processing serine protease Regulator
  IL989_RS07360 (IL989_07360) - 1476184..1477446 (-) 1263 WP_193351747.1 nucleotidyltransferase -
  IL989_RS07365 (IL989_07365) - 1477654..1478172 (+) 519 WP_013352159.1 DUF177 domain-containing protein -
  IL989_RS07370 (IL989_07370) rpmF 1478194..1478373 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  IL989_RS07375 (IL989_07375) gerR 1478530..1479105 (+) 576 WP_193351748.1 sporulation-specific transcriptional regulator GerR -
  IL989_RS07380 (IL989_07380) - 1479146..1479628 (-) 483 WP_071346860.1 N-acetyltransferase -
  IL989_RS07385 (IL989_07385) - 1479791..1480672 (+) 882 WP_014472569.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37480.23 Da        Isoelectric Point: 9.5435

>NTDB_id=435926 IL989_RS07355 WP_013352157.1 1475156..1476178(+) (sepM) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MKAKHFRWVFIILILLIAITFIKLPYYITQPGEASELRPLIKVDGGYPEKGSLSLMTVKVGPANPYTYLWAKVHPYDEIV
PDESIKEEGETDSDYMKRQLQMMKSSQENAVIAAYQKAGKQVKYSFNGIYASSVVSNMPAKGKIKVGDKIISADGKKYES
AEKLIDYISSKKAGEKVTFNIERDTKEKTVTLKLKSFPDDPKRAGIGVALYTDRNVKVKPDLHFSIENIGGPSAGLMMSL
EIYNQLTKPDETKGYNIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGAENSDYKNAVKTAKAIKSDMKIV
PVDTMQDALDYLDKLKVKST

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=435926 IL989_RS07355 WP_013352157.1 1475156..1476178(+) (sepM) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGAAAGCAAAACATTTTCGCTGGGTGTTTATCATCTTGATCTTATTAATCGCTATTACATTTATTAAGCTTCCGTATTA
CATCACACAGCCGGGAGAAGCATCAGAGCTGAGACCGCTGATTAAGGTGGACGGAGGCTATCCTGAAAAAGGAAGCCTTT
CCTTGATGACTGTCAAAGTTGGCCCCGCCAATCCGTATACATATCTTTGGGCGAAGGTGCATCCTTACGATGAAATCGTC
CCTGATGAAAGCATAAAAGAAGAGGGCGAAACTGATTCAGACTATATGAAGCGCCAGCTGCAAATGATGAAAAGCTCTCA
AGAAAACGCAGTCATTGCCGCTTATCAAAAAGCCGGCAAACAGGTAAAATACTCATTTAACGGCATTTACGCCAGCTCAG
TCGTCTCCAATATGCCGGCAAAAGGAAAAATAAAGGTCGGTGATAAAATCATCAGCGCGGACGGGAAAAAATATGAATCC
GCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGGGAAAAAGTAACGTTTAACATTGAACGTGACACGAAAGA
AAAGACCGTTACCCTTAAGCTGAAGTCATTCCCGGACGACCCGAAAAGAGCCGGAATCGGCGTAGCGTTATATACGGACC
GGAACGTGAAAGTGAAGCCGGATCTTCATTTCAGTATTGAAAACATCGGCGGGCCTTCTGCCGGTCTCATGATGTCTTTG
GAAATTTACAATCAGCTGACAAAACCTGACGAAACAAAAGGCTACAATATAGCCGGAACGGGAACAATCGACGTTGACGG
CAAGGTCGGACCGATTGGCGGAATCGATCAGAAAGTCGTCGCCGCAGACAAAGCGGGAAAAGATATTTTCTTTGCGCCGA
ACCAAAACGGAGCTGAAAACTCTGATTATAAAAATGCAGTAAAAACGGCGAAAGCGATTAAGTCCGATATGAAAATCGTT
CCTGTCGATACGATGCAGGACGCACTTGATTATTTGGATAAGCTGAAAGTAAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(230-330)

PDZ domain (PDZ_2)

(127-194)

Peptidase family M50 (Peptidase_M50)

(109-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JGM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.728

100

0.394