Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   IL989_RS07325 Genome accession   NZ_CP062984
Coordinates   1470829..1471278 (+) Length   149 a.a.
NCBI ID   WP_193351743.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1465829..1476278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS07285 (IL989_07285) ctaE 1465950..1466573 (+) 624 WP_013352146.1 cytochrome c oxidase subunit III -
  IL989_RS07290 (IL989_07290) ctaF 1466576..1466908 (+) 333 WP_007409686.1 cytochrome c oxidase subunit IVB -
  IL989_RS07295 (IL989_07295) ctaG 1466933..1467817 (+) 885 WP_193351742.1 cytochrome c oxidase assembly factor CtaG -
  IL989_RS07300 (IL989_07300) - 1467851..1468210 (-) 360 WP_065521350.1 YugN family protein -
  IL989_RS07305 (IL989_07305) - 1468351..1468794 (+) 444 WP_088612769.1 CBS domain-containing protein -
  IL989_RS07310 (IL989_07310) - 1468879..1469919 (+) 1041 WP_013352150.1 CAP domain-containing protein -
  IL989_RS07315 (IL989_07315) - 1470092..1470502 (+) 411 WP_013352151.1 YlbD family protein -
  IL989_RS07320 (IL989_07320) - 1470518..1470757 (+) 240 WP_003154475.1 YlbE-like family protein -
  IL989_RS07325 (IL989_07325) ylbF 1470829..1471278 (+) 450 WP_193351743.1 YlbF family regulator Regulator
  IL989_RS07330 (IL989_07330) - 1471337..1471609 (+) 273 WP_013352153.1 YlbG family protein -
  IL989_RS07335 (IL989_07335) rsmD 1471908..1472462 (+) 555 WP_193351744.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  IL989_RS07340 (IL989_07340) coaD 1472467..1472949 (+) 483 WP_013352154.1 pantetheine-phosphate adenylyltransferase -
  IL989_RS07345 (IL989_07345) ylbJ 1472967..1474193 (-) 1227 WP_193351745.1 sporulation integral membrane protein YlbJ -
  IL989_RS07350 (IL989_07350) - 1474371..1475150 (+) 780 WP_193351746.1 patatin-like phospholipase family protein -
  IL989_RS07355 (IL989_07355) sepM 1475156..1476178 (+) 1023 WP_013352157.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16899.99 Da        Isoelectric Point: 4.9442

>NTDB_id=435925 IL989_RS07325 WP_193351743.1 1470829..1471278(+) (ylbF) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MYATIESVRLQSEAEQLAGMILQSETAENYRDCYKRLHEDEEARRIIRSFMSIKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=435925 IL989_RS07325 WP_193351743.1 1470829..1471278(+) (ylbF) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGTATGCAACAATTGAGTCCGTCAGGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCATGAAGATGAAGAGGCACGGCGGATTATTCGTTCTTTTATGAGCATTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATATCATCCTGACTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAGCTGGATTTAAATGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTTCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGCTGCGGTTCCGGCGGCGGGTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

88.591

100

0.886