Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpE   Type   Regulator
Locus tag   IL989_RS06650 Genome accession   NZ_CP062984
Coordinates   1297108..1299204 (-) Length   698 a.a.
NCBI ID   WP_193351681.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context

Location: 1292108..1304204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS06625 (IL989_06625) - 1292682..1292942 (+) 261 WP_013352035.1 aspartyl-phosphate phosphatase Spo0E family protein -
  IL989_RS06630 (IL989_06630) - 1293151..1294668 (-) 1518 WP_088612710.1 ATP-binding protein -
  IL989_RS06635 (IL989_06635) - 1294868..1295314 (+) 447 WP_013352037.1 MarR family winged helix-turn-helix transcriptional regulator -
  IL989_RS06640 (IL989_06640) motB 1295350..1296147 (-) 798 WP_065521421.1 flagellar motor protein MotB -
  IL989_RS06645 (IL989_06645) motA 1296119..1296934 (-) 816 WP_013352039.1 flagellar motor stator protein MotA -
  IL989_RS06650 (IL989_06650) clpE 1297108..1299204 (-) 2097 WP_193351681.1 ATP-dependent protease ATP-binding subunit ClpE Regulator
  IL989_RS06655 (IL989_06655) - 1299602..1300639 (+) 1038 WP_193351682.1 hypothetical protein -
  IL989_RS06660 (IL989_06660) - 1300738..1301859 (+) 1122 WP_193351683.1 hypothetical protein -
  IL989_RS06665 (IL989_06665) queC 1302111..1302770 (+) 660 WP_193351684.1 7-cyano-7-deazaguanine synthase QueC -
  IL989_RS06670 (IL989_06670) queD 1302771..1303211 (+) 441 WP_045506490.1 6-carboxytetrahydropterin synthase QueD -
  IL989_RS06675 (IL989_06675) queE 1303204..1303935 (+) 732 WP_013352044.1 7-carboxy-7-deazaguanine synthase QueE -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 77883.99 Da        Isoelectric Point: 5.2483

>NTDB_id=435920 IL989_RS06650 WP_193351681.1 1297108..1299204(-) (clpE) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MRCQHCQKNEATIRLNMQVNSIQKQFVLCETCYTELTRKPSMSMGPQSLGFPFEQGFAPDQHKQQAGRKKGLLDELAQNV
TNGAKAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIAEGDVPNKLKNKELYLLDVASLVAN
TGIRGQFEERMKQLMNELKERKNVILFIDEIHLLVGAGSAEGSMDAGNILKPALARGELQVIGATTLKEYRQIEKDAALE
RRFQPVMVHEPSIEQAISILEGIKDKYEKYHSVTFSDEAIKACVTLSSRYIQDRHLPDKAIDLLDEAGSKANLELDTVNE
EEAAERLKAIDAEKTKALQEENYELAAKLRDEEAALEKQLAQESPASSSEIGAEHIQAIIEQKTGIPVGKLQADEQVKMK
ELEERLHQRVIGQEKAVKKVAKAVRRSRAGLKSKNRPVGSFLFVGPTGVGKTELSKTLADELFGTKDSIIRLDMSEYMEK
HAVSKIIGSPPGYVGHDEAGQLTEKVRRNPYSIVLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVLIMTSNA
GTGEKQAKVGFQSEESVMEEQTLIDSLSSFFKPEFLNRFDSIIEFQSLKKEHLVKIVSLLLAELEDTLKERGISLCVTDD
AKEKIAEIGYHPAFGARPLRRTIQELIEDEMTDLLLDDNEIKAFHVVMEEDDIKVRAQ

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=435920 IL989_RS06650 WP_193351681.1 1297108..1299204(-) (clpE) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGCGTTGTCAACATTGTCAGAAAAACGAGGCGACGATTCGCCTGAACATGCAAGTCAATTCCATTCAAAAACAATTCGT
TTTATGTGAAACATGTTATACAGAATTAACCCGAAAGCCGTCTATGAGCATGGGGCCGCAATCTTTGGGATTCCCGTTTG
AGCAAGGTTTCGCTCCGGATCAACATAAACAGCAGGCCGGCCGTAAAAAAGGCCTGCTCGACGAGCTCGCCCAAAACGTC
ACAAACGGCGCAAAAGCAGGTCTGATTGATCCTGTGATCGGCCGCGATGAAGAAGTGGCGCGCGTCATTGAAATTTTGAA
CCGCCGGAATAAAAACAACCCGGTGCTTATCGGTGAACCGGGTGTCGGTAAAACGGCTATTGCAGAAGGCTTAGCACTTA
AAATCGCTGAAGGCGATGTGCCGAATAAATTGAAAAACAAAGAGCTTTATCTGCTTGATGTCGCTTCCCTCGTCGCCAAT
ACAGGAATCAGAGGCCAGTTTGAAGAAAGAATGAAACAATTAATGAACGAATTAAAAGAGCGGAAAAACGTCATTTTGTT
CATTGATGAGATTCACCTTCTTGTAGGCGCCGGCTCTGCCGAGGGATCAATGGATGCCGGGAACATCCTGAAACCGGCCC
TAGCCCGAGGCGAACTGCAGGTCATCGGGGCGACGACATTGAAAGAGTACCGCCAGATTGAAAAAGATGCGGCACTTGAA
AGACGCTTCCAGCCTGTCATGGTTCACGAGCCTTCTATAGAACAGGCCATCAGCATTCTTGAAGGCATTAAAGATAAATA
TGAGAAATACCACAGCGTCACATTCAGCGATGAAGCGATCAAAGCGTGTGTTACGCTTTCTTCCCGCTACATTCAGGACC
GCCACCTGCCGGATAAAGCGATCGACTTGTTAGATGAAGCCGGCTCCAAAGCAAACCTGGAGCTTGATACCGTAAATGAA
GAAGAAGCGGCTGAACGACTCAAAGCAATTGACGCGGAGAAAACAAAAGCGCTTCAGGAAGAAAATTATGAGCTTGCCGC
GAAACTGCGTGATGAAGAAGCGGCATTGGAAAAGCAGCTGGCACAAGAATCACCGGCCTCTTCTTCAGAAATCGGGGCGG
AGCATATTCAAGCCATCATTGAACAGAAAACAGGCATCCCGGTCGGAAAACTGCAGGCTGATGAGCAAGTCAAAATGAAA
GAACTTGAAGAGCGCCTTCATCAGCGCGTCATCGGTCAGGAAAAAGCCGTGAAAAAAGTGGCGAAAGCGGTAAGACGAAG
CCGCGCCGGCTTAAAATCCAAAAACAGACCTGTCGGCTCCTTCCTCTTTGTCGGACCGACCGGGGTCGGAAAAACCGAGT
TATCAAAAACACTCGCGGATGAACTTTTCGGCACAAAAGATTCCATCATTCGGCTCGATATGAGTGAATACATGGAAAAA
CACGCCGTTTCAAAAATTATCGGTTCACCGCCGGGATATGTCGGACACGATGAAGCCGGTCAATTAACGGAAAAAGTACG
GCGCAATCCGTACAGCATCGTGCTCCTTGACGAGATTGAAAAAGCGCACCCTGACGTCCAGCATATGTTCCTGCAGATTA
TGGAGGACGGACGTCTGACAGACAGCCAGGGCAGAACGGTCAGCTTTAAAGATACCGTTTTGATCATGACAAGCAATGCG
GGAACCGGCGAAAAACAGGCGAAAGTCGGGTTCCAATCTGAAGAAAGCGTCATGGAAGAACAAACGCTGATTGATTCACT
GAGCTCGTTCTTTAAACCTGAATTTTTAAACCGATTTGACAGCATCATTGAATTCCAGTCTCTGAAAAAAGAACATCTCG
TAAAAATCGTCAGCCTGCTTCTCGCAGAACTTGAAGACACATTAAAAGAGCGCGGCATCAGTCTCTGCGTCACAGACGAT
GCGAAAGAAAAAATCGCTGAAATCGGCTACCACCCTGCTTTCGGAGCACGCCCGCTCAGAAGAACGATCCAAGAATTGAT
CGAGGACGAAATGACAGACCTCTTATTGGATGACAATGAAATAAAAGCCTTCCATGTTGTAATGGAAGAGGATGACATCA
AAGTCCGTGCACAATAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(115-246)

AAA domain (Cdc48 subfamily) (AAA_2)

(436-602)

AAA lid domain (AAA_lid_9)

(252-351)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(608-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

57.592

100

0.603
  clpC Lactococcus lactis subsp. cremoris KW2

56.54

100

0.595
  clpE Streptococcus pneumoniae TIGR4

55.798

100

0.586
  clpE Streptococcus pneumoniae Rx1

55.753

100

0.583
  clpE Streptococcus pneumoniae D39

55.753

100

0.583
  clpE Streptococcus pneumoniae R6

55.753

100

0.583
  clpC Bacillus subtilis subsp. subtilis str. 168

54.56

91.117

0.497
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.544

90.401

0.43
  clpC Streptococcus pneumoniae TIGR4

46.365

88.682

0.411
  clpC Streptococcus pneumoniae Rx1

46.365

88.682

0.411
  clpC Streptococcus pneumoniae D39

46.365

88.682

0.411
  clpC Streptococcus thermophilus LMD-9

45.779

88.252

0.404
  clpC Streptococcus thermophilus LMG 18311

45.44

87.966

0.4
  clpC Streptococcus mutans UA159

45.114

87.966

0.397
  clpA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

41.749

86.819

0.362