Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BY40_RS12700 Genome accession   NZ_CP051001
Coordinates   2620620..2621249 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O157:H16 str. 98-3133     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2615620..2626249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BY40_RS12680 ycbZ 2616021..2617781 (-) 1761 WP_000156518.1 Lon protease family protein -
  BY40_RS12685 matP 2617967..2618419 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  BY40_RS12690 ompA 2618495..2619535 (-) 1041 WP_000750416.1 porin OmpA -
  BY40_RS12695 sulA 2619892..2620401 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  BY40_RS12700 sxy/tfoX 2620620..2621249 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  BY40_RS12705 yccS 2621212..2623374 (-) 2163 WP_000875061.1 YccS family putative transporter -
  BY40_RS12710 yccF 2623384..2623830 (-) 447 WP_001261235.1 YccF domain-containing protein -
  BY40_RS12715 helD 2623953..2626007 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=435861 BY40_RS12700 WP_000839153.1 2620620..2621249(+) (sxy/tfoX) [Escherichia coli O157:H16 str. 98-3133]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=435861 BY40_RS12700 WP_000839153.1 2620620..2621249(+) (sxy/tfoX) [Escherichia coli O157:H16 str. 98-3133]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1