Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FOB43_RS21735 Genome accession   NZ_CP050992
Coordinates   4559495..4560289 (-) Length   264 a.a.
NCBI ID   WP_011135741.1    Uniprot ID   Q7NVZ7
Organism   Chromobacterium violaceum strain FDAARGOS_635     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4554495..4565289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB43_RS21705 (FOB43_21700) frr 4554859..4555416 (-) 558 WP_168228578.1 ribosome recycling factor -
  FOB43_RS21710 (FOB43_21705) pyrH 4555492..4556211 (-) 720 WP_011135746.1 UMP kinase -
  FOB43_RS21715 (FOB43_21710) tsf 4556303..4557169 (-) 867 WP_081543310.1 translation elongation factor Ts -
  FOB43_RS21720 (FOB43_21715) rpsB 4557243..4557974 (-) 732 WP_011135744.1 30S ribosomal protein S2 -
  FOB43_RS21725 (FOB43_21720) - 4558124..4558315 (-) 192 WP_011135743.1 hypothetical protein -
  FOB43_RS21730 (FOB43_21725) - 4558396..4559427 (+) 1032 WP_168228579.1 nitronate monooxygenase -
  FOB43_RS21735 (FOB43_21730) comL 4559495..4560289 (-) 795 WP_011135741.1 outer membrane protein assembly factor BamD Machinery gene
  FOB43_RS21740 (FOB43_21735) rluD 4560288..4561379 (+) 1092 WP_011135740.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FOB43_RS21745 (FOB43_21740) pgeF 4561369..4562106 (+) 738 WP_045051922.1 peptidoglycan editing factor PgeF -
  FOB43_RS21750 (FOB43_21745) - 4562212..4562823 (+) 612 WP_168228580.1 AraC family transcriptional regulator -
  FOB43_RS21755 (FOB43_21750) - 4562820..4563668 (+) 849 WP_168228581.1 GNAT family N-acetyltransferase -
  FOB43_RS21760 (FOB43_21755) - 4563810..4564463 (+) 654 WP_244956734.1 HD domain-containing protein -
  FOB43_RS21765 (FOB43_21760) - 4564492..4565211 (+) 720 WP_168228582.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30267.42 Da        Isoelectric Point: 7.9695

>NTDB_id=435812 FOB43_RS21735 WP_011135741.1 4559495..4560289(-) (comL) [Chromobacterium violaceum strain FDAARGOS_635]
MKRYVVAAMLVMVGLAGCATTETYDETRGWTVEKLYSEAHDELNSGNYTRAVKLYETLEARFPYGRYAQQAQMDLAYTHY
KDGEPELAIASADRFIKLHPTHPNLDYIYYLKGLVYYNDDSGLLAKWAGQDMSERDPRAAREAFAAFRELTTRFPSSSYA
PDAKAKMIRLVDALGGNEMHVARYYMKRGAYLAAANRAQGVVKDYANTKYPEEALAIMVAAYDKLQLPQLRDDARRVLAL
NYPQSQYLGKSWTVEEMPWWKLWK

Nucleotide


Download         Length: 795 bp        

>NTDB_id=435812 FOB43_RS21735 WP_011135741.1 4559495..4560289(-) (comL) [Chromobacterium violaceum strain FDAARGOS_635]
ATGAAAAGATACGTTGTTGCGGCTATGTTGGTGATGGTGGGTCTTGCCGGGTGTGCGACCACGGAAACCTACGACGAGAC
GCGCGGCTGGACCGTGGAGAAGCTGTATTCGGAAGCTCACGACGAGTTGAACAGCGGCAATTATACCCGCGCAGTCAAGC
TGTATGAAACGCTGGAAGCGCGTTTCCCCTACGGCCGCTACGCGCAGCAGGCGCAGATGGATCTGGCCTACACCCATTAC
AAGGATGGCGAACCCGAACTGGCCATCGCCTCCGCCGACCGTTTCATCAAGCTGCATCCCACGCATCCGAACCTCGACTA
CATCTATTATCTGAAGGGTTTGGTGTATTACAACGACGATTCTGGCTTGCTGGCCAAATGGGCCGGCCAGGACATGAGCG
AGCGCGATCCGCGCGCCGCGCGCGAGGCGTTCGCCGCCTTCCGCGAGCTGACCACCCGCTTCCCCAGCAGCAGCTACGCG
CCGGATGCCAAGGCCAAGATGATCCGCCTGGTGGACGCCCTGGGCGGCAACGAAATGCACGTGGCGCGCTACTACATGAA
GCGCGGCGCCTATCTGGCCGCCGCCAATCGCGCGCAGGGCGTGGTCAAGGATTACGCCAACACCAAGTATCCGGAAGAGG
CGCTGGCCATCATGGTGGCCGCCTACGACAAGCTGCAGCTGCCGCAGCTGCGCGACGACGCGCGCCGCGTGCTGGCGCTC
AATTACCCGCAGAGCCAGTACCTGGGCAAGTCGTGGACGGTGGAGGAGATGCCGTGGTGGAAGCTGTGGAAATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(32-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7NVZ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

58.052

100

0.587
  comL Neisseria gonorrhoeae MS11

57.303

100

0.58