Detailed information NTG0435742

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: A3L25_RS03820
• Genome accession: NZ_CP050951
• Coordinates: 838967..839833 (-)
• Length: 288 a.a.
• NCBI ID: WP_063425482.1
• Uniprot ID: A0AAP9SMD1
• Organism: Pseudomonas putida strain JQ581
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 833967..844833

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A3L25_RS03790 (A3L25_003795)	-	834742..836037 (-)	1296	WP_063425476.1	NAD(P)/FAD-dependent oxidoreductase	-
A3L25_RS03795 (A3L25_003800)	-	836122..836295 (-)	174	WP_013970765.1	DUF3094 family protein	-
A3L25_RS03800 (A3L25_003805)	-	836429..837058 (-)	630	WP_016501581.1	DUF1780 domain-containing protein	-
A3L25_RS03805 (A3L25_003810)	-	837252..837959 (+)	708	WP_063425478.1	energy-coupling factor ABC transporter permease	-
A3L25_RS03810 (A3L25_003815)	yacG	838147..838347 (-)	201	WP_016501579.1	DNA gyrase inhibitor YacG	-
A3L25_RS03815 (A3L25_003820)	coaE	838344..838967 (-)	624	WP_063425480.1	dephospho-CoA kinase	-
A3L25_RS03820 (A3L25_003825)	pilD	838967..839833 (-)	867	WP_063425482.1	A24 family peptidase	Machinery gene
A3L25_RS03825 (A3L25_003830)	-	839836..841044 (-)	1209	WP_063425483.1	type II secretion system F family protein	-
A3L25_RS03830 (A3L25_003835)	-	841261..841671 (+)	411	WP_016484801.1	pilin	-
A3L25_RS03840 (A3L25_003845)	-	842070..843224 (+)	1155	WP_169725094.1	Fic family protein	-
A3L25_RS03845 (A3L25_003850)	-	843483..843776 (+)	294	WP_023661668.1	IS3 family transposase	-
A3L25_RS03850 (A3L25_003855)	-	843773..844636 (+)	864	WP_004577668.1	IS3 family transposase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31993.24 Da
• Isoelectric Point: 7.5706

>NTDB_id=435742 A3L25_RS03820 WP_063425482.1 838967..839833(-) (pilD) [Pseudomonas putida strain JQ581]
MTLWTLLAEQPAYFLTLATVLGLLVGSFLNVLVYRLPIMLERQWQREAQEVLGLPLAQHERFDLCLPASRCPHCAHQIRA
WENIPVLSYLALRGRCSACKTRISPRYPLVEIASALLSLVVAWRFGASVEALLALPLTWCLLALSLIDADHQLLPDVLVL
PMLWLGLIVNAFSLYVPLADALWGAVAGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LVGLCLLRLRRYAMGTAIPFGPYLAIAGWIAVLWGDEMYASYMQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=435742 A3L25_RS03820 WP_063425482.1 838967..839833(-) (pilD) [Pseudomonas putida strain JQ581]
ATGACTTTATGGACTTTGCTGGCTGAGCAGCCGGCGTACTTCCTTACCCTGGCCACGGTGCTCGGCTTGCTGGTGGGCAG
CTTTCTCAACGTGCTGGTGTATCGCCTGCCGATCATGCTGGAGCGCCAATGGCAGCGTGAGGCGCAGGAGGTATTGGGGC
TGCCGCTTGCGCAACACGAACGGTTCGACCTGTGCCTGCCGGCATCCCGCTGCCCGCACTGCGCGCATCAGATTCGCGCG
TGGGAAAACATTCCGGTGCTCAGCTACCTGGCGTTGCGCGGGCGGTGCTCAGCCTGCAAAACGCGTATCAGCCCGCGCTA
CCCGCTGGTCGAGATAGCCAGCGCGCTGCTGTCGCTGGTGGTGGCCTGGCGTTTTGGCGCTTCGGTCGAGGCGTTGCTGG
CACTGCCGCTCACGTGGTGCCTGTTGGCCCTGAGCCTGATCGATGCGGACCACCAATTGCTGCCGGATGTGCTGGTGCTG
CCGATGCTGTGGCTTGGGCTGATCGTGAACGCCTTTAGCCTGTATGTGCCACTGGCCGACGCGCTGTGGGGCGCGGTGGC
CGGGTACCTCAGCTTGTGGACGGTGTACTGGGTGTTCAAGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGCGGTTGGCAGGTGCTGCCGTTGACGCTGCTGCTGTCGTCGGTGGTGGGGGCG
CTGGTTGGCCTGTGCCTGCTGCGTTTGCGCCGGTATGCGATGGGCACGGCGATACCGTTTGGCCCTTATCTGGCGATTGC
GGGGTGGATTGCTGTGCTCTGGGGTGATGAAATGTACGCCTCTTACATGCAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.986	95.833	0.517
pilD	Acinetobacter baumannii D1279779	50.534	97.569	0.493
pilD	Acinetobacter nosocomialis M2	49.822	97.569	0.486
pilD	Vibrio campbellii strain DS40M4	48.921	96.528	0.472
pilD	Neisseria gonorrhoeae MS11	49.814	93.403	0.465