Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   GHB95_RS02335 Genome accession   NZ_CP050930
Coordinates   450282..450890 (+) Length   202 a.a.
NCBI ID   WP_050303746.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NG211     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445282..455890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GHB95_RS02305 (GHB95_02310) - 445559..446140 (-) 582 WP_003687910.1 superoxide dismutase -
  GHB95_RS02310 (GHB95_02315) dnaB 446304..447710 (+) 1407 WP_050157387.1 replicative DNA helicase -
  GHB95_RS02320 (GHB95_02320) pilH 448018..448680 (+) 663 WP_050157402.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GHB95_RS02325 (GHB95_02325) pilV 448712..449323 (+) 612 WP_164823800.1 type IV pilus modification protein PilV Machinery gene
  GHB95_RS02330 (GHB95_02330) pilJ 449320..450303 (+) 984 WP_164823233.1 PilW family protein Machinery gene
  GHB95_RS02335 (GHB95_02335) pilK 450282..450890 (+) 609 WP_050303746.1 pilus assembly protein Machinery gene
  GHB95_RS02340 (GHB95_02340) pilL 450892..451365 (+) 474 WP_174813111.1 PilX family type IV pilin Machinery gene
  GHB95_RS02345 (GHB95_02345) - 451977..452422 (-) 446 Protein_458 AzlC family ABC transporter permease -
  GHB95_RS02350 (GHB95_02350) dut 452588..453040 (+) 453 WP_050303745.1 dUTP diphosphatase -
  GHB95_RS02355 (GHB95_02355) dapC 453118..454305 (+) 1188 WP_164823235.1 succinyldiaminopimelate transaminase -
  GHB95_RS02360 (GHB95_02360) yaaA 454616..455395 (+) 780 WP_003694987.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21978.95 Da        Isoelectric Point: 7.5809

>NTDB_id=435685 GHB95_RS02335 WP_050303746.1 450282..450890(+) (pilK) [Neisseria gonorrhoeae strain NG211]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCENGLCTAVNVRTNDANEETFDNIVVKGKPTVEAVKRPCPAKSGKNSAGLCIDNKGMEYNKGVAGVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=435685 GHB95_RS02335 WP_050303746.1 450282..450890(+) (pilK) [Neisseria gonorrhoeae strain NG211]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTACGGACAAATGATGCTAATGA
AGAGACTTTTGACAATATCGTGGTGAAAGGCAAGCCTACCGTTGAGGCCGTGAAGCGTCCTTGCCCTGCAAAGTCTGGCA
AAAATTCTGCCGGTCTGTGCATTGACAATAAAGGGATGGAATATAATAAAGGCGTGGCAGGCGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

90.64

100

0.911