Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HFP49_RS00040 Genome accession   NZ_CP050929
Coordinates   9252..9827 (+) Length   191 a.a.
NCBI ID   WP_011543464.1    Uniprot ID   A0AAV5PJF2
Organism   Lactobacillus delbrueckii subsp. bulgaricus strain LDB-C1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4252..14827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HFP49_RS00025 (HFP49_00025) gyrB 4257..6218 (+) 1962 WP_011677861.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  HFP49_RS00030 (HFP49_00030) gyrA 6231..8702 (+) 2472 WP_248574244.1 DNA gyrase subunit A -
  HFP49_RS00035 (HFP49_00035) rpsF 8918..9211 (+) 294 WP_011677863.1 30S ribosomal protein S6 -
  HFP49_RS00040 (HFP49_00040) ssb 9252..9827 (+) 576 WP_011543464.1 single-stranded DNA-binding protein Machinery gene
  HFP49_RS00045 (HFP49_00045) rpsR 9854..10090 (+) 237 WP_003622127.1 30S ribosomal protein S18 -
  HFP49_RS00050 (HFP49_00050) - 10231..12252 (+) 2022 WP_215447675.1 DHH family phosphoesterase -
  HFP49_RS00055 (HFP49_00055) rplI 12275..12730 (+) 456 WP_215444844.1 50S ribosomal protein L9 -
  HFP49_RS00060 (HFP49_00060) dnaB 12754..14124 (+) 1371 WP_003622122.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20582.25 Da        Isoelectric Point: 4.6437

>NTDB_id=435655 HFP49_RS00040 WP_011543464.1 9252..9827(+) (ssb) [Lactobacillus delbrueckii subsp. bulgaricus strain LDB-C1]
MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRERESRQQNSGFGGQGQSQNTGFNTGFGGGSGYANNAFGSPAQSNGPANAGFNE
DNKKDAGGDTNTNPFDSSDDAINVSNDDLPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=435655 HFP49_RS00040 WP_011543464.1 9252..9827(+) (ssb) [Lactobacillus delbrueckii subsp. bulgaricus strain LDB-C1]
ATGATCAATAACGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCACTTTGGCCGTTGACCGGCAGTTTACCAATGCATCAGGCCAGAGAGAAGCGGACTTCATCAGCTGCGTGATTT
GGCGCAAGGCTGCGGAGAACTTCTGCAACTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGGATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTGACAGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGAGCGTGAAAGCCGTCAGCAAAACAGCGGATTTGGCGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACCGGATTTG
GCGGCGGCAGCGGCTACGCCAACAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCCAGCTAATGCCGGATTCAATGAA
GATAACAAGAAAGATGCCGGCGGAGACACGAACACCAACCCGTTCGACAGCTCTGACGATGCAATCAACGTCTCAAATGA
CGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.333

100

0.586
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.597

100

0.466