Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   HFD80_RS01660 Genome accession   NZ_CP050907
Coordinates   350942..351760 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain DT-Ab022     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 345942..356760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HFD80_RS01625 (HFD80_01625) - 346525..346654 (-) 130 Protein_311 hypothetical protein -
  HFD80_RS01630 (HFD80_01630) rpoZ 346693..346971 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HFD80_RS01635 (HFD80_01635) gmk 347044..347673 (-) 630 WP_000015937.1 guanylate kinase -
  HFD80_RS01640 (HFD80_01640) ispH 347796..348746 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HFD80_RS01645 (HFD80_01645) fimU 348916..349389 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HFD80_RS01650 (HFD80_01650) pilV 349383..349943 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  HFD80_RS01655 (HFD80_01655) pilW 349944..350945 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  HFD80_RS01660 (HFD80_01660) pilX 350942..351760 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HFD80_RS01665 (HFD80_01665) pilY1 351772..355626 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  HFD80_RS01670 (HFD80_01670) - 355639..356120 (+) 482 Protein_320 type IV pilin protein -
  HFD80_RS01675 (HFD80_01675) pilE 356117..356542 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=435460 HFD80_RS01660 WP_000149374.1 350942..351760(+) (pilX) [Acinetobacter baumannii strain DT-Ab022]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=435460 HFD80_RS01660 WP_000149374.1 350942..351760(+) (pilX) [Acinetobacter baumannii strain DT-Ab022]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993