Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   HFD80_RS01675 Genome accession   NZ_CP050907
Coordinates   356117..356542 (+) Length   141 a.a.
NCBI ID   WP_000788342.1    Uniprot ID   N9K1U0
Organism   Acinetobacter baumannii strain DT-Ab022     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 351117..361542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HFD80_RS01665 (HFD80_01665) pilY1 351772..355626 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  HFD80_RS01670 (HFD80_01670) - 355639..356120 (+) 482 Protein_320 type IV pilin protein -
  HFD80_RS01675 (HFD80_01675) pilE 356117..356542 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene
  HFD80_RS01680 (HFD80_01680) rpsP 356689..356940 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  HFD80_RS01685 (HFD80_01685) rimM 356960..357508 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  HFD80_RS01690 (HFD80_01690) trmD 357554..358294 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HFD80_RS01695 (HFD80_01695) rplS 358503..358871 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  HFD80_RS01700 (HFD80_01700) - 358924..359865 (-) 942 WP_085916958.1 lipase family alpha/beta hydrolase -
  HFD80_RS01705 (HFD80_01705) - 359980..361014 (-) 1035 WP_001189447.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15214.45 Da        Isoelectric Point: 7.8464

>NTDB_id=435462 HFD80_RS01675 WP_000788342.1 356117..356542(+) (pilE) [Acinetobacter baumannii strain DT-Ab022]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=435462 HFD80_RS01675 WP_000788342.1 356117..356542(+) (pilE) [Acinetobacter baumannii strain DT-Ab022]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

92.199

100

0.922
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518