Detailed information NTG0435278

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AHOnP31_RS19755
• Genome accession: NZ_CP050851
• Coordinates: 4329815..4330687 (+)
• Length: 290 a.a.
• NCBI ID: WP_206818893.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain OnP3.1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4324815..4335687

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AHOnP31_RS19735 (AHOnP31_19770)	nadC	4325126..4325983 (+)	858	WP_206818891.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AHOnP31_RS19740 (AHOnP31_19775)	tapA	4326306..4326722 (+)	417	WP_042066959.1	type IVa pilus major pilin TapA	-
AHOnP31_RS19745 (AHOnP31_19780)	pilB	4326729..4328435 (+)	1707	WP_029302067.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
AHOnP31_RS19750 (AHOnP31_19785)	pilC	4328551..4329792 (+)	1242	WP_206818892.1	type II secretion system F family protein	Machinery gene
AHOnP31_RS19755 (AHOnP31_19790)	pilD	4329815..4330687 (+)	873	WP_206818893.1	A24 family peptidase	Machinery gene
AHOnP31_RS19760 (AHOnP31_19795)	coaE	4330706..4331320 (+)	615	WP_206818894.1	dephospho-CoA kinase	-
AHOnP31_RS19765 (AHOnP31_19800)	zapD	4331358..4332080 (+)	723	WP_206818895.1	cell division protein ZapD	-
AHOnP31_RS19770 (AHOnP31_19805)	yacG	4332090..4332284 (+)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
AHOnP31_RS19775 (AHOnP31_19810)	mutT	4332345..4332758 (-)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
AHOnP31_RS19780 (AHOnP31_19815)	-	4332767..4333951 (-)	1185	WP_206818896.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32522.86 Da
• Isoelectric Point: 6.7408

>NTDB_id=435278 AHOnP31_RS19755 WP_206818893.1 4329815..4330687(+) (pilD) [Aeromonas hydrophila strain OnP3.1]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEDRYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFPPGWALLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFIPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=435278 AHOnP31_RS19755 WP_206818893.1 4329815..4330687(+) (pilD) [Aeromonas hydrophila strain OnP3.1]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCATGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCGGAAACACAGCCGCAGCAGGAAGATCGCTACAACCTGATGGTGCCGCGTTCAGCCTGCCCTCATTGCGGCCACGCC
ATCACGGCCATGGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGACGCTGCCGTGAATGCCAGGCACCCATATC
GGCCCGTTATCCTCTGGTGGAATTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCAGCAACATTCCCACCGGGCTGGGCTT
TGCTGGCCGCCCTGCTGCTCACCTGGGTACTGGTGGCGCTTACTTTCATCGATCTGGACAAAATGCTGCTGCCGGACCAG
CTGACCCTGCCACTGTTGTGGGGCGGCCTGCTGTTCAACCTGGCAGGGGGATTTATACCGCTGGCCGATGCGGTGATCGG
CGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGGTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGGATTGGCCTCATTCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTACTT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.189	98.621	0.603
pilD	Vibrio campbellii strain DS40M4	55.594	98.621	0.548
pilD	Acinetobacter baumannii D1279779	53.873	97.931	0.528
pilD	Acinetobacter nosocomialis M2	53.873	97.931	0.528
pilD	Neisseria gonorrhoeae MS11	48.718	94.138	0.459