Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HC697_RS17210 Genome accession   NZ_CP050843
Coordinates   3389519..3390115 (-) Length   198 a.a.
NCBI ID   WP_038989503.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain Bckp186     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3384519..3395115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC697_RS17195 (HC697_17195) helD 3384727..3386781 (-) 2055 WP_004179218.1 DNA helicase IV -
  HC697_RS17200 (HC697_17200) - 3386906..3387352 (+) 447 WP_002898425.1 YccF domain-containing protein -
  HC697_RS17205 (HC697_17205) yccS 3387370..3389505 (+) 2136 WP_032434245.1 YccS family putative transporter -
  HC697_RS17210 (HC697_17210) sxy/tfoX 3389519..3390115 (-) 597 WP_038989503.1 TfoX/Sxy family DNA transformation protein Regulator
  HC697_RS17215 (HC697_17215) sulA 3390464..3390973 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  HC697_RS17220 (HC697_17220) ompA 3391326..3392396 (+) 1071 WP_002898408.1 porin OmpA -
  HC697_RS17225 (HC697_17225) matP 3392528..3392980 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  HC697_RS17230 (HC697_17230) - 3393166..3394923 (+) 1758 WP_032434243.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22444.05 Da        Isoelectric Point: 10.2361

>NTDB_id=435178 HC697_RS17210 WP_038989503.1 3389519..3390115(-) (sxy/tfoX) [Klebsiella pneumoniae strain Bckp186]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQGAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=435178 HC697_RS17210 WP_038989503.1 3389519..3390115(-) (sxy/tfoX) [Klebsiella pneumoniae strain Bckp186]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAAAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGGGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51