Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   IMP84_RS09145 Genome accession   NZ_CP062868
Coordinates   1920131..1920787 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain Res13-Lact-PEB01-20     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1915131..1925787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMP84_RS09115 (IMP84_09115) dcyD 1916011..1916997 (+) 987 WP_042030993.1 D-cysteine desulfhydrase -
  IMP84_RS09120 (IMP84_09120) tcyL 1917012..1917680 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  IMP84_RS09125 (IMP84_09125) tcyN 1917677..1918429 (+) 753 WP_195707251.1 L-cystine ABC transporter ATP-binding protein TcyN -
  IMP84_RS09130 (IMP84_09130) sdiA 1918659..1919381 (+) 723 WP_001154271.1 transcriptional regulator SdiA -
  IMP84_RS09135 (IMP84_09135) yecF 1919448..1919672 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  IMP84_RS09140 (IMP84_09140) yecU 1919659..1919835 (-) 177 WP_000590347.1 protein YecU -
  IMP84_RS24295 - 1919918..1919989 (-) 72 Protein_1804 transcriptional regulator -
  IMP84_RS09145 (IMP84_09145) letA 1920131..1920787 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  IMP84_RS09150 (IMP84_09150) uvrC 1920784..1922616 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  IMP84_RS09155 (IMP84_09155) pgsA 1922673..1923221 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IMP84_RS09175 (IMP84_09175) yecA 1923871..1924536 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=435116 IMP84_RS09145 WP_000611335.1 1920131..1920787(+) (letA) [Escherichia coli strain Res13-Lact-PEB01-20]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=435116 IMP84_RS09145 WP_000611335.1 1920131..1920787(+) (letA) [Escherichia coli strain Res13-Lact-PEB01-20]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTTGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486