Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IMP90_RS16090 Genome accession   NZ_CP062865
Coordinates   3354446..3355183 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O39:H21 strain Res13-Lact-PEB08-01     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3349446..3360183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMP90_RS16075 (IMP90_16070) clpC 3349900..3352473 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  IMP90_RS16080 (IMP90_16075) yfiH 3352603..3353334 (-) 732 WP_029402462.1 purine nucleoside phosphorylase YfiH -
  IMP90_RS16085 (IMP90_16080) rluD 3353331..3354311 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IMP90_RS16090 (IMP90_16085) comL 3354446..3355183 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  IMP90_RS16095 (IMP90_16090) raiA 3355454..3355795 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  IMP90_RS16100 (IMP90_16095) pheL 3355899..3355946 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  IMP90_RS16105 (IMP90_16100) pheA 3356045..3357205 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  IMP90_RS16110 (IMP90_16105) tyrA 3357248..3358369 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  IMP90_RS16115 (IMP90_16110) aroF 3358380..3359450 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  IMP90_RS16120 (IMP90_16115) yfiL 3359660..3360025 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=435047 IMP90_RS16090 WP_000197686.1 3354446..3355183(+) (comL) [Escherichia coli O39:H21 strain Res13-Lact-PEB08-01]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=435047 IMP90_RS16090 WP_000197686.1 3354446..3355183(+) (comL) [Escherichia coli O39:H21 strain Res13-Lact-PEB08-01]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376