Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   SMUGS5_RS02120 Genome accession   NC_018089
Coordinates   426981..427574 (-) Length   197 a.a.
NCBI ID   WP_002267053.1    Uniprot ID   -
Organism   Streptococcus mutans GS-5     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 421981..432574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUGS5_RS02105 (SMUGS5_02005) nadE 422370..423194 (+) 825 WP_002267027.1 ammonia-dependent NAD(+) synthetase -
  SMUGS5_RS02110 (SMUGS5_02010) pepC 423307..424641 (+) 1335 WP_002263054.1 aminopeptidase C -
  SMUGS5_RS02115 (SMUGS5_02015) pbp1a 424985..426880 (-) 1896 Protein_393 penicillin-binding protein PBP1A -
  SMUGS5_RS02120 (SMUGS5_02020) recU 426981..427574 (-) 594 WP_002267053.1 Holliday junction resolvase RecU Machinery gene
  SMUGS5_RS02125 (SMUGS5_02025) - 427654..428175 (+) 522 WP_002267943.1 DUF1273 domain-containing protein -
  SMUGS5_RS02130 (SMUGS5_02030) gpsB 428281..428619 (+) 339 WP_002263050.1 cell division regulator GpsB -
  SMUGS5_RS02135 (SMUGS5_02035) - 429069..430223 (+) 1155 WP_002263884.1 class I SAM-dependent RNA methyltransferase -
  SMUGS5_RS02140 (SMUGS5_02040) - 430239..431879 (+) 1641 WP_014834862.1 cell division site-positioning protein MapZ family protein -
  SMUGS5_RS02145 (SMUGS5_02045) luxS 432040..432522 (-) 483 WP_002264383.1 S-ribosylhomocysteine lyase Regulator

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 22815.32 Da        Isoelectric Point: 10.2373

>NTDB_id=43493 SMUGS5_RS02120 WP_002267053.1 426981..427574(-) (recU) [Streptococcus mutans GS-5]
MVNYPHHFIRKQSKPSQISKTINFANRGMSFEAAINATNNYYLSKKIAVIHKKPTPIQIVRVDYPRRSRAKIVEAYFRQA
STTDYSGVYKGYYIDFEAKETRHKTSIPMKNFHAHQIKHMSQVLDQKGICFVLLHFSTLRETYLLPASHLIHFYRIDNGG
KSMPLDYIKKNGYQVNVSAFPQVPYLDIIDKNILGGD

Nucleotide


Download         Length: 594 bp        

>NTDB_id=43493 SMUGS5_RS02120 WP_002267053.1 426981..427574(-) (recU) [Streptococcus mutans GS-5]
ATGGTCAACTACCCTCATCATTTCATTCGTAAACAAAGCAAACCCAGTCAAATATCTAAAACAATCAATTTTGCCAATCG
TGGAATGTCCTTTGAAGCAGCTATAAATGCGACAAATAACTACTATTTATCAAAAAAAATAGCTGTTATCCATAAAAAAC
CAACTCCTATTCAAATTGTAAGGGTTGATTATCCTAGACGAAGTCGTGCTAAAATTGTTGAGGCTTATTTTAGGCAGGCT
TCAACAACCGACTACTCAGGAGTCTATAAAGGATATTACATTGATTTTGAAGCAAAAGAGACCAGACATAAGACATCTAT
TCCCATGAAAAACTTTCATGCACATCAGATCAAACATATGTCACAAGTTTTAGACCAAAAAGGTATTTGCTTTGTCTTAC
TGCATTTTTCCACACTTAGGGAGACCTATTTGCTTCCAGCCTCCCATCTAATCCATTTTTATCGGATTGATAATGGCGGG
AAGTCCATGCCACTTGATTATATCAAAAAAAATGGTTATCAGGTGAATGTGTCAGCTTTTCCTCAGGTTCCTTACTTAGA
TATTATTGATAAAAACATTTTAGGCGGTGATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(27-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.254

100

0.503

Multiple sequence alignment