Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   SMUGS5_RS02145 Genome accession   NC_018089
Coordinates   432040..432522 (-) Length   160 a.a.
NCBI ID   WP_002264383.1    Uniprot ID   -
Organism   Streptococcus mutans GS-5     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 427040..437522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUGS5_RS02125 (SMUGS5_02025) - 427654..428175 (+) 522 WP_002267943.1 DUF1273 domain-containing protein -
  SMUGS5_RS02130 (SMUGS5_02030) gpsB 428281..428619 (+) 339 WP_002263050.1 cell division regulator GpsB -
  SMUGS5_RS02135 (SMUGS5_02035) - 429069..430223 (+) 1155 WP_002263884.1 class I SAM-dependent RNA methyltransferase -
  SMUGS5_RS02140 (SMUGS5_02040) - 430239..431879 (+) 1641 WP_014834862.1 cell division site-positioning protein MapZ family protein -
  SMUGS5_RS02145 (SMUGS5_02045) luxS 432040..432522 (-) 483 WP_002264383.1 S-ribosylhomocysteine lyase Regulator
  SMUGS5_RS02150 (SMUGS5_02050) - 432667..434274 (+) 1608 WP_002263046.1 ribonuclease Y -
  SMUGS5_RS02155 (SMUGS5_02055) gmk 434721..435353 (+) 633 WP_002263045.1 guanylate kinase -
  SMUGS5_RS02160 (SMUGS5_02060) rpoZ 435377..435694 (+) 318 WP_014834863.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17976.62 Da        Isoelectric Point: 6.1364

>NTDB_id=43494 SMUGS5_RS02145 WP_002264383.1 432040..432522(-) (luxS) [Streptococcus mutans GS-5]
MTKEVTVESFELDHTAVKAPYVRLISEEFGPKGDLITNFDIRLVQPNEDSIPTAGLHTIEHLLAKLIRQRIDGMIDCSPF
GCRTGFHLIMWGKHTTTQIATVIKASLEEIANTISWKDVPGTTIESCGNYKDHSLFSAKEWAKLILKQGISDDPFERHLV

Nucleotide


Download         Length: 483 bp        

>NTDB_id=43494 SMUGS5_RS02145 WP_002264383.1 432040..432522(-) (luxS) [Streptococcus mutans GS-5]
ATGACAAAAGAAGTTACTGTTGAAAGCTTTGAACTTGACCACACTGCTGTAAAAGCCCCTTATGTCCGTCTTATTTCAGA
AGAGTTTGGACCTAAAGGCGATCTTATTACCAATTTTGATATTCGCTTAGTACAGCCTAATGAAGACTCTATTCCGACTG
CAGGCCTTCATACTATTGAACATTTACTGGCTAAGCTGATTCGTCAGCGTATTGACGGGATGATTGACTGTTCCCCTTTT
GGCTGTCGTACTGGTTTTCATCTCATCATGTGGGGTAAGCATACAACAACCCAAATAGCCACAGTCATCAAAGCAAGTTT
AGAAGAAATTGCTAATACAATCTCATGGAAAGATGTCCCTGGAACAACTATTGAGTCCTGTGGGAATTACAAAGATCATA
GCCTTTTTTCAGCTAAAGAATGGGCAAAGCTGATTTTAAAACAAGGCATTTCAGATGATCCTTTTGAGCGTCATCTAGTG
TAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

39.597

93.125

0.369

Multiple sequence alignment