Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IMP99_RS06100 Genome accession   NZ_CP062855
Coordinates   1243270..1244007 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O20:H12 strain Res13-Lact-PEB17-18     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1238270..1249007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMP99_RS06075 (IMP99_06070) tyrA 1238644..1239765 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  IMP99_RS06080 (IMP99_06075) pheA 1239808..1240968 (-) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  IMP99_RS06085 (IMP99_06080) pheL 1241067..1241114 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  IMP99_RS06090 (IMP99_06085) raiA 1241218..1241559 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  IMP99_RS06095 (IMP99_06090) - 1241820..1243166 (-) 1347 WP_000483767.1 IS4-like element IS4 family transposase -
  IMP99_RS06100 (IMP99_06095) comL 1243270..1244007 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  IMP99_RS06105 (IMP99_06100) rluD 1244142..1245122 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IMP99_RS06110 (IMP99_06105) yfiH 1245119..1245850 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  IMP99_RS06115 (IMP99_06110) clpC 1245980..1248553 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=434868 IMP99_RS06100 WP_000197686.1 1243270..1244007(-) (comL) [Escherichia coli O20:H12 strain Res13-Lact-PEB17-18]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=434868 IMP99_RS06100 WP_000197686.1 1243270..1244007(-) (comL) [Escherichia coli O20:H12 strain Res13-Lact-PEB17-18]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376