Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IMQ20_RS05925 Genome accession   NZ_CP062838
Coordinates   1224887..1225624 (-) Length   245 a.a.
NCBI ID   WP_000197673.1    Uniprot ID   -
Organism   Escherichia coli strain Res13-Lact-PER02-33     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1219887..1230624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMQ20_RS05895 (IMQ20_05905) yfiL 1220045..1220410 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  IMQ20_RS05900 (IMQ20_05910) aroF 1220620..1221690 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  IMQ20_RS05905 (IMQ20_05915) tyrA 1221701..1222822 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  IMQ20_RS05910 (IMQ20_05920) pheA 1222865..1224025 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  IMQ20_RS05915 (IMQ20_05925) pheL 1224124..1224171 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  IMQ20_RS05920 (IMQ20_05930) raiA 1224275..1224616 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  IMQ20_RS05925 (IMQ20_05935) comL 1224887..1225624 (-) 738 WP_000197673.1 outer membrane protein assembly factor BamD Machinery gene
  IMQ20_RS05930 (IMQ20_05940) rluD 1225759..1226739 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IMQ20_RS05935 (IMQ20_05945) yfiH 1226736..1227467 (+) 732 WP_021553789.1 purine nucleoside phosphorylase YfiH -
  IMQ20_RS05940 (IMQ20_05950) clpC 1227597..1230170 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27843.47 Da        Isoelectric Point: 7.1587

>NTDB_id=434627 IMQ20_RS05925 WP_000197673.1 1224887..1225624(-) (comL) [Escherichia coli strain Res13-Lact-PER02-33]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPKSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=434627 IMQ20_RS05925 WP_000197673.1 1224887..1225624(-) (comL) [Escherichia coli strain Res13-Lact-PER02-33]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAAAAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.115

99.592

0.38
  comL Neisseria gonorrhoeae MS11

37.295

99.592

0.371