Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   IMQ30_RS09390 Genome accession   NZ_CP062826
Coordinates   1963792..1965624 (+) Length   610 a.a.
NCBI ID   WP_195686572.1    Uniprot ID   -
Organism   Escherichia coli strain Res13-Lact-PER12-33-A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1958792..1970624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMQ30_RS09355 (IMQ30_09365) dcyD 1959018..1960004 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  IMQ30_RS09360 (IMQ30_09370) tcyL 1960019..1960687 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  IMQ30_RS09365 (IMQ30_09375) tcyN 1960684..1961436 (+) 753 WP_100003997.1 L-cystine ABC transporter ATP-binding protein TcyN -
  IMQ30_RS09370 (IMQ30_09380) sdiA 1961666..1962388 (+) 723 WP_001152713.1 transcriptional regulator SdiA -
  IMQ30_RS09375 (IMQ30_09385) yecF 1962456..1962680 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  IMQ30_RS09380 (IMQ30_09390) yecU 1962667..1962843 (-) 177 WP_000590344.1 protein YecU -
  IMQ30_RS25420 - 1962881..1962997 (-) 117 Protein_1857 transcriptional regulator -
  IMQ30_RS09385 (IMQ30_09395) letA 1963139..1963795 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  IMQ30_RS09390 (IMQ30_09400) uvrC 1963792..1965624 (+) 1833 WP_195686572.1 excinuclease ABC subunit UvrC Machinery gene
  IMQ30_RS09395 (IMQ30_09405) pgsA 1965681..1966229 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IMQ30_RS09415 (IMQ30_09425) yecA 1966879..1967544 (+) 666 WP_000847880.1 UPF0149 family protein YecA -
  IMQ30_RS09420 (IMQ30_09430) tyrP 1967606..1968817 (-) 1212 WP_000797573.1 tyrosine transporter TyrP -
  IMQ30_RS09425 (IMQ30_09435) yecH 1969007..1969246 (+) 240 WP_000377224.1 YecH family metal-binding protein -
  IMQ30_RS09430 (IMQ30_09440) ftnA 1969284..1969781 (-) 498 WP_000917208.1 non-heme ferritin -
  IMQ30_RS09435 (IMQ30_09445) yecR 1969952..1970275 (-) 324 WP_001237869.1 YecR-like lipofamily protein -
  IMQ30_RS09440 (IMQ30_09450) azuC 1970538..1970624 (+) 87 WP_010723106.1 stress response protein AzuC -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 68143.99 Da        Isoelectric Point: 9.2909

>NTDB_id=434479 IMQ30_RS09390 WP_195686572.1 1963792..1965624(+) (uvrC) [Escherichia coli strain Res13-Lact-PER12-33-A]
MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLL
EHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYCGPFPNGYAVRETLALLQKIFPIRQCENSVYR
NRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT
EKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLD
FNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDI
SHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFA
ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLET
IEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=434479 IMQ30_RS09390 WP_195686572.1 1963792..1965624(+) (uvrC) [Escherichia coli strain Res13-Lact-PER12-33-A]
GTGAGTGATCAGTTTGACGCAAAAGCGTTTTTAAAAACCGTAACCAGCCAGCCAGGCGTTTATCGCATGTACGATGCTGG
TGGTACGGTTATCTATGTCGGCAAAGCGAAAGACCTGAAAAAACGGCTTTCCAGCTATTTCCGTAGCAACCTCGCTTCGC
GCAAAACCGAAGCGCTGGTCGCCCAGATCCAGCAAATTGATGTAACGGTTACTCATACAGAAACCGAAGCGCTGTTGCTG
GAACACAACTACATCAAACTCTATCAGCCGCGTTACAACGTTTTACTACGCGATGATAAATCTTATCCCTTTATCTTCCT
GAGTGGCGATACCCATCCGCGTCTGGCGATGCATCGTGGTGCGAAGCATGCTAAAGGTGAATATTGCGGCCCGTTCCCGA
ATGGCTATGCCGTACGTGAAACACTGGCGCTACTGCAAAAGATTTTCCCCATTCGCCAGTGCGAAAACAGTGTTTATCGC
AATCGCTCGCGTCCGTGTCTGCAATATCAGATAGGACGTTGTCTGGGGCCGTGCGTTGAAGGACTGGTGAGTGAAGAAGA
ATACGCTCAGCAGGTCGAGTATGTGCGCCTGTTTTTGTCTGGCAAAGATGATCAGGTGCTTACGCAACTGATTAGCCGTA
TGGAAACTGCCAGCCAGAATCTGGAGTTTGAAGAAGCTGCACGTATTCGCGACCAAATTCAGGCGGTGCGACGCGTCACC
GAAAAACAGTTTGTTTCCAATACCGGCGACGACCTTGACGTTATTGGTGTGGCGTTCGATGCGGGCATGGCTTGTGTCCA
CGTATTGTTCATTCGTCAGGGCAAAGTGCTCGGCAGCCGCAGCTATTTCCCGAAAGTGCCTGGCGGTACGGAACTGAGCG
AGGTGGTGGAAACCTTCGTAGGTCAGTTCTATTTACAAGGCAGCCAGATGCGCACCTTACCGGGTGAGATCCTGCTCGAT
TTTAATCTTAGCGATAAAACGCTGCTCGCCGATTCCCTTTCAGAACTGGCGGGACGCAAGATTAATGTTCAAACCAAACC
TCGCGGCGATAGGGCGCGTTATCTGAAACTCGCGCGCACCAATGCGGCGACGGCCTTAACCAGCAAACTTTCGCAGCAAT
CTACCGTTCACCAGCGACTGACCGCGCTTGCCAGCGTGTTGAAATTGCCGGAAGTGAAGCGGATGGAGTGCTTTGACATC
AGCCATACCATGGGCGAACAAACCGTCGCTTCCTGTGTGGTGTTTGATGCTAACGGCCCGCTGCGTGCGGAGTATCGGCG
CTATAACATTACTGGCATCACGCCGGGCGATGATTATGCGGCGATGAATCAGGTGCTGCGTCGGCGTTATGGTAAAGCCA
TTGACGACAGTAAGATCCCGGATGTGATCCTTATCGACGGCGGCAAAGGCCAGCTTGCGCAGGCGAAAAATGTCTTCGCC
GAACTGGATGTCTCATGGGATAAAAATCATCCGCTGCTACTTGGCGTTGCCAAAGGAGCAGATCGTAAGGCTGGGCTGGA
AACGCTGTTCTTTGAGCCGGAAGGTGAGGGATTTAGTTTGCCGCCAGATTCTCCCGCGCTGCATGTTATCCAGCATATTC
GCGATGAATCACACGATCACGCGATTGGCGGGCACCGTAAAAAACGGGCGAAGGTCAAAAATACCAGTTCCCTGGAAACC
ATTGAAGGCGTCGGGCCAAAACGTCGGCAAATGTTGTTGAAATATATGGGCGGTTTGCAAGGTTTACGTAACGCCAGCGT
CGAGGAAATTGCAAAAGTGCCGGGTATTTCGCAAGGTCTGGCAGAAAAGATCTTCTGGTCGTTGAAACATTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(205-237)

Helix-hairpin-helix domain (HHH_5)

(558-609)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-542)

GIY-YIG catalytic domain (GIY-YIG)

(18-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

37.727

99.508

0.375
  uvrC Streptococcus pneumoniae R6

37.397

99.508

0.372
  uvrC Streptococcus pneumoniae D39

37.397

99.508

0.372