Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IMQ31_RS20380 Genome accession   NZ_CP062824
Coordinates   4285949..4286686 (-) Length   245 a.a.
NCBI ID   WP_000197689.1    Uniprot ID   -
Organism   Escherichia coli O167:H26 strain Res13-Lact-PER13-34     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4280949..4291686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMQ31_RS20350 (IMQ31_20360) yfiL 4281107..4281472 (-) 366 WP_059341897.1 DUF2799 domain-containing protein -
  IMQ31_RS20355 (IMQ31_20365) aroF 4281682..4282752 (+) 1071 WP_001168043.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  IMQ31_RS20360 (IMQ31_20370) tyrA 4282763..4283884 (+) 1122 WP_000225220.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  IMQ31_RS20365 (IMQ31_20375) pheA 4283927..4285087 (-) 1161 WP_085458974.1 bifunctional chorismate mutase/prephenate dehydratase -
  IMQ31_RS20370 (IMQ31_20380) pheL 4285186..4285233 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  IMQ31_RS20375 (IMQ31_20385) raiA 4285337..4285678 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  IMQ31_RS20380 (IMQ31_20390) comL 4285949..4286686 (-) 738 WP_000197689.1 outer membrane protein assembly factor BamD Machinery gene
  IMQ31_RS20385 (IMQ31_20395) rluD 4286821..4287801 (+) 981 WP_085458973.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IMQ31_RS20390 (IMQ31_20400) yfiH 4287798..4288529 (+) 732 WP_000040136.1 purine nucleoside phosphorylase YfiH -
  IMQ31_RS20395 (IMQ31_20405) clpC 4288659..4291232 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27828.45 Da        Isoelectric Point: 7.9331

>NTDB_id=434433 IMQ31_RS20380 WP_000197689.1 4285949..4286686(-) (comL) [Escherichia coli O167:H26 strain Res13-Lact-PER13-34]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAKYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=434433 IMQ31_RS20380 WP_000197689.1 4285949..4286686(-) (comL) [Escherichia coli O167:H26 strain Res13-Lact-PER13-34]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCTCGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCAAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCGACGCGTGATG
CGCTGCCGCTAATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376