Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   IMQ59_RS22970 Genome accession   NZ_CP062811
Coordinates   4823102..4824511 (+) Length   469 a.a.
NCBI ID   WP_001188777.1    Uniprot ID   Q32A39
Organism   Escherichia coli strain Res13-Sevr-PER07-33     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 4818102..4829511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMQ59_RS22955 (IMQ59_22955) typA 4818262..4820085 (-) 1824 WP_000570668.1 ribosome-dependent GTPase TypA -
  IMQ59_RS22960 (IMQ59_22960) glnA 4820458..4821867 (+) 1410 WP_001271717.1 glutamate--ammonia ligase -
  IMQ59_RS22965 (IMQ59_22965) glnL 4822041..4823090 (+) 1050 WP_000190577.1 nitrogen regulation protein NR(II) -
  IMQ59_RS22970 (IMQ59_22970) luxO 4823102..4824511 (+) 1410 WP_001188777.1 nitrogen regulation protein NR(I) Regulator
  IMQ59_RS22975 (IMQ59_22975) yshB 4824623..4824733 (+) 111 WP_000893994.1 YshB family small membrane protein -
  IMQ59_RS22980 (IMQ59_22980) hemN 4824923..4826296 (-) 1374 WP_000116090.1 oxygen-independent coproporphyrinogen III oxidase -
  IMQ59_RS22985 (IMQ59_22985) yihI 4826485..4826991 (-) 507 WP_001300530.1 Der GTPase-activating protein YihI -
  IMQ59_RS25935 - 4827110..4827276 (-) 167 Protein_4553 hypothetical protein -
  IMQ59_RS22990 (IMQ59_22990) yihA 4827573..4828205 (+) 633 WP_000183344.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52254.74 Da        Isoelectric Point: 6.4561

>NTDB_id=434271 IMQ59_RS22970 WP_001188777.1 4823102..4824511(+) (luxO) [Escherichia coli strain Res13-Sevr-PER07-33]
MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII
MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE
IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPR
LARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPD
SWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=434271 IMQ59_RS22970 WP_001188777.1 4823102..4824511(+) (luxO) [Escherichia coli strain Res13-Sevr-PER07-33]
ATGCAACGAGGGATAGTCTGGGTAGTCGATGACGATAGTTCCATCCGTTGGGTGCTTGAACGTGCGCTCGCTGGAGCGGG
TTTAACCTGTACGACATTTGAGAACGGCGCGGAGGTACTGGAGGCGCTGGCGAGCAAAACGCCGGATGTGCTGCTTTCAG
ATATCCGTATGCCGGGAATGGACGGGCTGGCGCTGCTCAAGCAGATTAAACAGCGCCATCCGATGCTTCCGGTCATCATT
ATGACCGCACATTCCGATCTGGATGCTGCCGTCAGCGCCTATCAACAGGGGGCGTTTGATTATCTGCCCAAACCGTTTGA
TATCGACGAAGCCGTGGCGCTGGTTGAGCGCGCCATCAGTCATTACCAGGAACAGCAGCAGCCGCGTAATGTTCAGCTTA
ACGGCCCAACGACCGATATCATCGGCGAAGCGCCAGCCATGCAGGACGTGTTCCGTATTATCGGTCGGCTCTCGCGTTCT
TCTATTAGCGTGCTGATTAACGGCGAATCCGGCACCGGTAAAGAACTGGTCGCTCATGCCCTGCATCGCCACAGTCCGCG
AGCCAAAGCGCCGTTTATCGCTCTGAATATGGCGGCTATCCCGAAGGATTTGATCGAATCAGAATTGTTTGGTCACGAGA
AAGGCGCGTTTACCGGCGCGAATACCATTCGTCAGGGGCGTTTTGAACAGGCTGATGGCGGTACATTATTTCTCGATGAA
ATTGGCGATATGCCGCTGGATGTGCAGACGCGTTTGCTGCGCGTGCTGGCAGACGGTCAGTTTTACCGCGTTGGCGGCTA
TGCGCCGGTGAAAGTGGATGTGCGGATTATCGCTGCCACTCACCAGAATCTCGAACAGCGGGTGCAGGAAGGTAAGTTCC
GTGAGGATCTGTTCCACCGCCTGAACGTTATCCGCGTTCATCTGCCGCCGCTGCGTGAGCGTCGGGAAGATATTCCCCGC
CTGGCGCGCCATTTTTTACAGGTTGCCGCGCGAGAACTGGGCGTAGAAGCGAAGTTGCTGCATCCGGAAACCGAAGCTGC
TCTGACGCGTCTGGCGTGGCCAGGCAACGTGCGCCAGCTGGAAAACACCTGCCGCTGGCTAACGGTGATGGCCGCCGGGC
AGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCGCAAATGCAACCGGAC
AGTTGGGCGACGCTTCTTGCGCAGTGGGCAGACAGAGCGCTGCGTTCCGGTCATCAAAATCTGCTTTCCGAAGCGCAGCC
AGAGCTGGAGCGGACGTTACTGACGACCGCGTTGCGACATACGCAGGGGCATAAACAGGAAGCGGCGCGGCTACTCGGCT
GGGGCCGCAACACTCTGACGCGTAAGTTAAAAGAGCTGGGGATGGAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(427-466)

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32A39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

39.871

98.934

0.394
  pilR Pseudomonas aeruginosa PAK

39.066

100

0.392