Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   IMQ59_RS09570 Genome accession   NZ_CP062811
Coordinates   2007534..2008190 (+) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli strain Res13-Sevr-PER07-33     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2002534..2013190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMQ59_RS09540 (IMQ59_09540) dcyD 2003413..2004399 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  IMQ59_RS09545 (IMQ59_09545) tcyL 2004414..2005082 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  IMQ59_RS09550 (IMQ59_09550) tcyN 2005079..2005831 (+) 753 WP_001272991.1 L-cystine ABC transporter ATP-binding protein TcyN -
  IMQ59_RS09555 (IMQ59_09555) sdiA 2006061..2006783 (+) 723 WP_001537184.1 transcriptional regulator SdiA -
  IMQ59_RS09560 (IMQ59_09560) yecF 2006851..2007075 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  IMQ59_RS09565 (IMQ59_09565) yecU 2007062..2007238 (-) 177 WP_000590344.1 protein YecU -
  IMQ59_RS26120 - 2007276..2007392 (-) 117 WP_001302039.1 hypothetical protein -
  IMQ59_RS09570 (IMQ59_09570) letA 2007534..2008190 (+) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  IMQ59_RS09575 (IMQ59_09575) uvrC 2008187..2010019 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  IMQ59_RS09580 (IMQ59_09580) pgsA 2010076..2010624 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IMQ59_RS09600 (IMQ59_09600) yecA 2011273..2011938 (+) 666 WP_021574648.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=434236 IMQ59_RS09570 WP_000611328.1 2007534..2008190(+) (letA) [Escherichia coli strain Res13-Sevr-PER07-33]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=434236 IMQ59_RS09570 WP_000611328.1 2007534..2008190(+) (letA) [Escherichia coli strain Res13-Sevr-PER07-33]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTAAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATCCGTTCTGTCTATTCTGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CATTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACGAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482