Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BACAU_RS11960 Genome accession   NC_016784
Coordinates   2517728..2518063 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis CAU B946     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2512728..2523063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACAU_RS11940 (BACAU_2302) gcvT 2513338..2514438 (-) 1101 WP_014305405.1 glycine cleavage system aminomethyltransferase GcvT -
  BACAU_RS11945 (BACAU_2303) - 2514861..2516531 (+) 1671 WP_041481884.1 DEAD/DEAH box helicase -
  BACAU_RS11950 (BACAU_2304) - 2516549..2517343 (+) 795 WP_014305407.1 YqhG family protein -
  BACAU_RS11955 (BACAU_2305) sinI 2517521..2517694 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  BACAU_RS11960 (BACAU_2306) sinR 2517728..2518063 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  BACAU_RS11965 (BACAU_2307) tasA 2518111..2518896 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  BACAU_RS11970 (BACAU_2308) sipW 2518960..2519544 (-) 585 WP_014305408.1 signal peptidase I SipW -
  BACAU_RS11975 (BACAU_2309) tapA 2519516..2520187 (-) 672 WP_014305409.1 amyloid fiber anchoring/assembly protein TapA -
  BACAU_RS11980 (BACAU_2310) - 2520446..2520775 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  BACAU_RS11985 (BACAU_2311) - 2520815..2520994 (-) 180 WP_003153093.1 YqzE family protein -
  BACAU_RS11990 (BACAU_2312) comGG 2521051..2521428 (-) 378 WP_014305410.1 competence type IV pilus minor pilin ComGG Machinery gene
  BACAU_RS11995 (BACAU_2313) comGF 2521429..2521824 (-) 396 WP_046559876.1 competence type IV pilus minor pilin ComGF -
  BACAU_RS12000 (BACAU_2314) comGE 2521838..2522152 (-) 315 WP_041481885.1 competence type IV pilus minor pilin ComGE Machinery gene
  BACAU_RS12005 (BACAU_2315) comGD 2522136..2522573 (-) 438 WP_014305413.1 competence type IV pilus minor pilin ComGD Machinery gene
  BACAU_RS12010 (BACAU_2316) comGC 2522563..2522829 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=43413 BACAU_RS11960 WP_003153104.1 2517728..2518063(+) (sinR) [Bacillus velezensis CAU B946]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=43413 BACAU_RS11960 WP_003153104.1 2517728..2518063(+) (sinR) [Bacillus velezensis CAU B946]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment