Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | HCU65_RS00575 | Genome accession | NZ_CP050705 |
| Coordinates | 103414..105852 (+) | Length | 812 a.a. |
| NCBI ID | WP_003328317.1 | Uniprot ID | - |
| Organism | Bacillus atrophaeus strain PENSV20 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 98414..110852
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HCU65_RS00560 (HCU65_00560) | ctsR | 101291..101755 (+) | 465 | WP_003328320.1 | transcriptional regulator CtsR | - |
| HCU65_RS00565 (HCU65_00565) | - | 101769..102326 (+) | 558 | WP_003328319.1 | UvrB/UvrC motif-containing protein | - |
| HCU65_RS00570 (HCU65_00570) | - | 102326..103417 (+) | 1092 | WP_010787416.1 | protein arginine kinase | - |
| HCU65_RS00575 (HCU65_00575) | clpC | 103414..105852 (+) | 2439 | WP_003328317.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| HCU65_RS00580 (HCU65_00580) | radA | 105937..107316 (+) | 1380 | WP_219946955.1 | DNA repair protein RadA | Machinery gene |
| HCU65_RS00585 (HCU65_00585) | disA | 107320..108402 (+) | 1083 | WP_010787418.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| HCU65_RS00590 (HCU65_00590) | - | 108523..109623 (+) | 1101 | WP_003328314.1 | PIN/TRAM domain-containing protein | - |
| HCU65_RS00595 (HCU65_00595) | ispD | 109637..110335 (+) | 699 | WP_219946956.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| HCU65_RS00600 (HCU65_00600) | ispF | 110328..110804 (+) | 477 | WP_003328312.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
Sequence
Protein
Download Length: 812 a.a. Molecular weight: 90364.87 Da Isoelectric Point: 5.9519
>NTDB_id=434088 HCU65_RS00575 WP_003328317.1 103414..105852(+) (clpC) [Bacillus atrophaeus strain PENSV20]
MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSDKIQKEVESLIGRGQEMSQTIHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSASGTNSNANT
PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPIQVDQPSVDESVQILRGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMVV
SSWTGVPVSKIAQTETDKLLNMENLLHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFVFLGPTGVGKTELARALAE
SIFGDEEAMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDETQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLN
EIVTLMSDQLTKRLKEQDLSIELTEAAKAKVADEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDGE
FVVKTTAKTNNL
MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSDKIQKEVESLIGRGQEMSQTIHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSASGTNSNANT
PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPIQVDQPSVDESVQILRGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMVV
SSWTGVPVSKIAQTETDKLLNMENLLHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFVFLGPTGVGKTELARALAE
SIFGDEEAMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDETQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLN
EIVTLMSDQLTKRLKEQDLSIELTEAAKAKVADEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDGE
FVVKTTAKTNNL
Nucleotide
Download Length: 2439 bp
>NTDB_id=434088 HCU65_RS00575 WP_003328317.1 103414..105852(+) (clpC) [Bacillus atrophaeus strain PENSV20]
ATGATGTTTGGAAGATTTACAGAGCGCGCGCAAAAGGTATTGGCACTTGCACAGGAGGAAGCACTTCGTTTAGGGCATAA
CAATATTGGCACAGAGCATATTTTATTAGGACTGGTACGCGAAGGAGAAGGTATTGCAGCTAAAGCGCTTCAAGCACTTG
GCCTCGGTTCTGATAAAATCCAAAAAGAAGTGGAGAGCTTAATTGGACGCGGACAAGAAATGTCCCAAACCATTCATTAT
ACTCCGAGAGCTAAAAAAGTGATTGAGCTTTCAATGGATGAGGCAAGAAAACTTGGTCATTCTTACGTAGGGACAGAACA
TATCCTTCTCGGACTCATACGCGAAGGAGAAGGTGTGGCAGCGAGAGTGCTGAATAACCTTGGCGTAAGTTTAAATAAAG
CGAGACAGCAGGTTCTCCAGCTTCTTGGAAGCAATGAAACAGGATCTTCTGCCTCAGGAACAAACAGCAATGCAAATACT
CCGACGCTTGACAGCTTGGCGAGAGATTTAACAGCGATAGCGAAGGAAGACAGCCTTGATCCGGTTATCGGCAGAAGCAA
GGAAATTCAGCGGGTAATTGAAGTGCTGAGCCGCAGAACGAAAAACAATCCTGTGCTTATCGGGGAACCGGGTGTAGGGA
AAACGGCTATTGCTGAAGGGCTTGCACAGCAAATCATCAACAATGAAGTTCCTGAAATCTTGCGCGATAAACGTGTTATG
ACATTAGACATGGGAACGGTCGTTGCCGGCACAAAGTACCGTGGTGAATTTGAAGACCGTTTGAAAAAGGTAATGGATGA
AATTCGTCAAGCAGGCAATATTATTCTCTTTATTGATGAGCTTCATACATTGATAGGGGCAGGCGGAGCAGAAGGTGCGA
TTGATGCATCAAATATTTTAAAGCCGTCACTTGCCCGCGGAGAGCTGCAATGCATCGGGGCGACCACTCTTGATGAGTAC
CGCAAATATATTGAAAAAGATGCAGCGCTTGAGCGCCGATTCCAACCAATCCAGGTTGATCAGCCTTCTGTAGACGAAAG
CGTTCAAATATTAAGAGGGTTACGTGACCGGTATGAAGCGCATCACCGGGTTTCAATTACTGATGAAGCCATTGAAGCTG
CGGTTAAGCTTTCTGACCGATATATTTCTGATCGGTTCCTTCCGGATAAAGCAATTGATTTGATTGATGAAGCAGGTTCT
AAAGTAAGATTGCGTTCATTTACAACTCCACCAAATTTGAAGGAGCTTGAACAAAAACTTGATGAAGTCCGTAAAGAAAA
AGATGCGGCGGTGCAAAGCCAAGAGTTTGAAAAAGCCGCCTCATTACGCGATACAGAACAGCGTTTAAGAGAACAAGTGG
AAGATACGAAGAAAACGTGGAAAGAGAAACAAGGCCAGGAAAATTCAGAAGTATCGGTTGAAGATATCGCAATGGTTGTT
TCAAGTTGGACCGGGGTTCCTGTTTCTAAAATTGCGCAAACTGAAACGGATAAGCTGCTGAATATGGAAAATCTCCTTCA
TTCCCGTGTTATCGGGCAGGATGAAGCCGTTGTAGCTGTTGCTAAGGCTGTCAGACGCGCGAGAGCAGGGTTGAAAGACC
CGAAACGGCCGATTGGTTCATTCGTATTCTTAGGCCCTACAGGTGTAGGGAAAACCGAGCTTGCAAGAGCACTTGCTGAA
TCCATTTTCGGTGATGAAGAAGCGATGATCAGAATCGATATGTCAGAATACATGGAGAAACACTCGACATCAAGACTTGT
CGGTTCACCTCCTGGATATGTCGGTTATGATGAAGGCGGTCAGTTAACAGAAAAAGTTAGAAGAAAACCATACTCTGTTG
TGCTGCTTGATGAAATTGAAAAAGCGCATCCGGATGTATTCAATATTCTTTTACAAGTGCTTGAAGATGGCCGTCTGACT
GATTCGAAGGGACGCACAGTTGATTTCCGCAATACAATTCTTATCATGACGTCGAACGTCGGAGCCAGCGAGCTGAAACG
CAATAAGTACGTTGGTTTTAATGTTCAGGATGAGACTCAAAATCACAAAGACATGAAAGATAAAGTAATGGGTGAGCTGA
AACGGGCATTCAGACCGGAGTTTATCAACCGTATTGATGAGATTATTGTATTCCACTCACTCGAGAAGAAACATCTAAAT
GAAATTGTGACACTTATGTCGGATCAATTAACAAAACGCCTAAAAGAACAAGACCTATCAATTGAGCTGACAGAAGCTGC
AAAAGCGAAAGTAGCCGATGAAGGGGTAGATCTGGAGTACGGCGCCCGTCCGTTAAGAAGAGCAATTCAAAAGCATGTAG
AAGACCGTTTATCAGAGGAACTGCTTAGAGGAAATATTGATAAAGGTCAGCATATTGTGCTTGATGTTGAAGATGGAGAG
TTTGTCGTAAAAACGACAGCTAAAACGAATAATTTATAA
ATGATGTTTGGAAGATTTACAGAGCGCGCGCAAAAGGTATTGGCACTTGCACAGGAGGAAGCACTTCGTTTAGGGCATAA
CAATATTGGCACAGAGCATATTTTATTAGGACTGGTACGCGAAGGAGAAGGTATTGCAGCTAAAGCGCTTCAAGCACTTG
GCCTCGGTTCTGATAAAATCCAAAAAGAAGTGGAGAGCTTAATTGGACGCGGACAAGAAATGTCCCAAACCATTCATTAT
ACTCCGAGAGCTAAAAAAGTGATTGAGCTTTCAATGGATGAGGCAAGAAAACTTGGTCATTCTTACGTAGGGACAGAACA
TATCCTTCTCGGACTCATACGCGAAGGAGAAGGTGTGGCAGCGAGAGTGCTGAATAACCTTGGCGTAAGTTTAAATAAAG
CGAGACAGCAGGTTCTCCAGCTTCTTGGAAGCAATGAAACAGGATCTTCTGCCTCAGGAACAAACAGCAATGCAAATACT
CCGACGCTTGACAGCTTGGCGAGAGATTTAACAGCGATAGCGAAGGAAGACAGCCTTGATCCGGTTATCGGCAGAAGCAA
GGAAATTCAGCGGGTAATTGAAGTGCTGAGCCGCAGAACGAAAAACAATCCTGTGCTTATCGGGGAACCGGGTGTAGGGA
AAACGGCTATTGCTGAAGGGCTTGCACAGCAAATCATCAACAATGAAGTTCCTGAAATCTTGCGCGATAAACGTGTTATG
ACATTAGACATGGGAACGGTCGTTGCCGGCACAAAGTACCGTGGTGAATTTGAAGACCGTTTGAAAAAGGTAATGGATGA
AATTCGTCAAGCAGGCAATATTATTCTCTTTATTGATGAGCTTCATACATTGATAGGGGCAGGCGGAGCAGAAGGTGCGA
TTGATGCATCAAATATTTTAAAGCCGTCACTTGCCCGCGGAGAGCTGCAATGCATCGGGGCGACCACTCTTGATGAGTAC
CGCAAATATATTGAAAAAGATGCAGCGCTTGAGCGCCGATTCCAACCAATCCAGGTTGATCAGCCTTCTGTAGACGAAAG
CGTTCAAATATTAAGAGGGTTACGTGACCGGTATGAAGCGCATCACCGGGTTTCAATTACTGATGAAGCCATTGAAGCTG
CGGTTAAGCTTTCTGACCGATATATTTCTGATCGGTTCCTTCCGGATAAAGCAATTGATTTGATTGATGAAGCAGGTTCT
AAAGTAAGATTGCGTTCATTTACAACTCCACCAAATTTGAAGGAGCTTGAACAAAAACTTGATGAAGTCCGTAAAGAAAA
AGATGCGGCGGTGCAAAGCCAAGAGTTTGAAAAAGCCGCCTCATTACGCGATACAGAACAGCGTTTAAGAGAACAAGTGG
AAGATACGAAGAAAACGTGGAAAGAGAAACAAGGCCAGGAAAATTCAGAAGTATCGGTTGAAGATATCGCAATGGTTGTT
TCAAGTTGGACCGGGGTTCCTGTTTCTAAAATTGCGCAAACTGAAACGGATAAGCTGCTGAATATGGAAAATCTCCTTCA
TTCCCGTGTTATCGGGCAGGATGAAGCCGTTGTAGCTGTTGCTAAGGCTGTCAGACGCGCGAGAGCAGGGTTGAAAGACC
CGAAACGGCCGATTGGTTCATTCGTATTCTTAGGCCCTACAGGTGTAGGGAAAACCGAGCTTGCAAGAGCACTTGCTGAA
TCCATTTTCGGTGATGAAGAAGCGATGATCAGAATCGATATGTCAGAATACATGGAGAAACACTCGACATCAAGACTTGT
CGGTTCACCTCCTGGATATGTCGGTTATGATGAAGGCGGTCAGTTAACAGAAAAAGTTAGAAGAAAACCATACTCTGTTG
TGCTGCTTGATGAAATTGAAAAAGCGCATCCGGATGTATTCAATATTCTTTTACAAGTGCTTGAAGATGGCCGTCTGACT
GATTCGAAGGGACGCACAGTTGATTTCCGCAATACAATTCTTATCATGACGTCGAACGTCGGAGCCAGCGAGCTGAAACG
CAATAAGTACGTTGGTTTTAATGTTCAGGATGAGACTCAAAATCACAAAGACATGAAAGATAAAGTAATGGGTGAGCTGA
AACGGGCATTCAGACCGGAGTTTATCAACCGTATTGATGAGATTATTGTATTCCACTCACTCGAGAAGAAACATCTAAAT
GAAATTGTGACACTTATGTCGGATCAATTAACAAAACGCCTAAAAGAACAAGACCTATCAATTGAGCTGACAGAAGCTGC
AAAAGCGAAAGTAGCCGATGAAGGGGTAGATCTGGAGTACGGCGCCCGTCCGTTAAGAAGAGCAATTCAAAAGCATGTAG
AAGACCGTTTATCAGAGGAACTGCTTAGAGGAAATATTGATAAAGGTCAGCATATTGTGCTTGATGTTGAAGATGGAGAG
TTTGTCGTAAAAACGACAGCTAAAACGAATAATTTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
98.025 |
99.754 |
0.978 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
49.625 |
98.522 |
0.489 |
| clpC | Streptococcus thermophilus LMD-9 |
46.481 |
100 |
0.472 |
| clpC | Streptococcus thermophilus LMG 18311 |
46.238 |
100 |
0.469 |
| clpC | Streptococcus pneumoniae Rx1 |
45.365 |
99.631 |
0.452 |
| clpC | Streptococcus pneumoniae D39 |
45.365 |
99.631 |
0.452 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.241 |
99.631 |
0.451 |
| clpC | Streptococcus mutans UA159 |
43.826 |
100 |
0.446 |
| clpE | Streptococcus mutans UA159 |
53.005 |
79.926 |
0.424 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
50 |
84.729 |
0.424 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.234 |
79.926 |
0.417 |
| clpE | Streptococcus pneumoniae Rx1 |
52.234 |
79.926 |
0.417 |
| clpE | Streptococcus pneumoniae D39 |
52.234 |
79.926 |
0.417 |
| clpE | Streptococcus pneumoniae R6 |
52.234 |
79.926 |
0.417 |