Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HCU70_RS13435 Genome accession   NZ_CP050690
Coordinates   2720712..2721584 (-) Length   290 a.a.
NCBI ID   WP_167775026.1    Uniprot ID   -
Organism   Staphylococcus aureus strain PMB179-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2715712..2726584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCU70_RS13425 (HCU70_13425) trmFO 2717000..2718307 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  HCU70_RS13430 (HCU70_13430) topA 2718463..2720538 (-) 2076 WP_001557331.1 type I DNA topoisomerase -
  HCU70_RS13435 (HCU70_13435) dprA 2720712..2721584 (-) 873 WP_167775026.1 DNA-processing protein DprA Machinery gene
  HCU70_RS13440 (HCU70_13440) fmhC 2721757..2723001 (-) 1245 WP_000672867.1 FemA/FemB family glycyltransferase FmhC -
  HCU70_RS13445 (HCU70_13445) - 2723029..2724147 (-) 1119 WP_001041666.1 LysM peptidoglycan-binding domain-containing protein -
  HCU70_RS13450 (HCU70_13450) sucD 2724374..2725282 (-) 909 WP_000110254.1 succinate--CoA ligase subunit alpha -
  HCU70_RS13455 (HCU70_13455) sucC 2725304..2726470 (-) 1167 WP_001020808.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33634.10 Da        Isoelectric Point: 9.6024

>NTDB_id=433969 HCU70_RS13435 WP_167775026.1 2720712..2721584(-) (dprA) [Staphylococcus aureus strain PMB179-1]
MIKLFLLKLYWAHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGRHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=433969 HCU70_RS13435 WP_167775026.1 2720712..2721584(-) (dprA) [Staphylococcus aureus strain PMB179-1]
TTGATTAAACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGGCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

99.655

100

0.997
  dprA Staphylococcus aureus N315

99.31

100

0.993