Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HCU70_RS08900 Genome accession   NZ_CP050690
Coordinates   1823740..1824135 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain PMB179-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1818740..1829135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCU70_RS08870 (HCU70_08870) - 1819999..1820403 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  HCU70_RS08875 (HCU70_08875) - 1820740..1820832 (+) 93 WP_031835036.1 hypothetical protein -
  HCU70_RS08880 (HCU70_08880) - 1820964..1821197 (+) 234 WP_000384523.1 DUF1146 family protein -
  HCU70_RS08885 (HCU70_08885) murA 1821308..1822573 (+) 1266 WP_031807007.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  HCU70_RS08890 (HCU70_08890) fabZ 1822607..1823047 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  HCU70_RS08895 (HCU70_08895) - 1823106..1823546 (-) 441 WP_000846746.1 YwpF-like family protein -
  HCU70_RS08900 (HCU70_08900) ssb 1823740..1824135 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  HCU70_RS08905 (HCU70_08905) sceD 1824524..1825219 (+) 696 WP_000752001.1 lytic transglycosylase SceD -
  HCU70_RS08910 (HCU70_08910) tenA 1825799..1826488 (+) 690 WP_000396079.1 thiaminase II -
  HCU70_RS08915 (HCU70_08915) thiD 1826481..1827311 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  HCU70_RS08920 (HCU70_08920) thiM 1827295..1828086 (+) 792 WP_167774995.1 hydroxyethylthiazole kinase -
  HCU70_RS08925 (HCU70_08925) thiE 1828088..1828729 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=433946 HCU70_RS08900 WP_000932694.1 1823740..1824135(+) (ssb) [Staphylococcus aureus strain PMB179-1]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=433946 HCU70_RS08900 WP_000932694.1 1823740..1824135(+) (ssb) [Staphylococcus aureus strain PMB179-1]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992