Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BACAU_RS01785 Genome accession   NC_016784
Coordinates   326351..326788 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis CAU B946     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 321351..331788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACAU_RS20870 - 321931..322056 (-) 126 Protein_296 hypothetical protein -
  BACAU_RS01755 (BACAU_0295) - 322209..323411 (+) 1203 WP_014304313.1 GTP-binding protein -
  BACAU_RS01760 (BACAU_0296) - 323476..324612 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  BACAU_RS01765 (BACAU_0297) - 324627..325061 (+) 435 WP_003156592.1 RDD family protein -
  BACAU_RS01770 (BACAU_0298) - 325178..325453 (+) 276 WP_371745793.1 YckD family protein -
  BACAU_RS21250 - 325557..325640 (+) 84 WP_223151977.1 family 1 glycosylhydrolase -
  BACAU_RS01775 (BACAU_0299) - 325672..325890 (+) 219 Protein_302 family 1 glycosylhydrolase -
  BACAU_RS01780 (BACAU_0300) nin/comJ 325931..326329 (-) 399 WP_014304317.1 competence protein ComJ Regulator
  BACAU_RS01785 (BACAU_0301) nucA/comI 326351..326788 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BACAU_RS01790 (BACAU_0302) hxlB 327147..327704 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  BACAU_RS01795 (BACAU_0303) hxlA 327701..328336 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  BACAU_RS01800 (BACAU_0304) - 328568..328930 (+) 363 WP_014304320.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=43380 BACAU_RS01785 WP_003156588.1 326351..326788(-) (nucA/comI) [Bacillus velezensis CAU B946]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=43380 BACAU_RS01785 WP_003156588.1 326351..326788(-) (nucA/comI) [Bacillus velezensis CAU B946]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGTCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment