Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PADK2_RS00105 Genome accession   NC_018080
Coordinates   22855..23943 (+) Length   362 a.a.
NCBI ID   WP_003118479.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa DK2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 17855..28943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PADK2_RS00085 (PADK2_00085) rsmB 18750..20054 (-) 1305 WP_003118477.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PADK2_RS00090 (PADK2_00090) fmt 20051..20995 (-) 945 WP_003118478.1 methionyl-tRNA formyltransferase -
  PADK2_RS00095 (PADK2_00095) def 21050..21556 (-) 507 WP_003107059.1 peptide deformylase -
  PADK2_RS00100 (PADK2_00100) tsaP 21695..22720 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PADK2_RS00105 (PADK2_00105) dprA 22855..23943 (+) 1089 WP_003118479.1 DNA-processing protein DprA Machinery gene
  PADK2_RS00110 (PADK2_00110) - 23984..24541 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  PADK2_RS00115 (PADK2_00115) - 24551..25528 (-) 978 WP_003118480.1 NADPH:quinone reductase -
  PADK2_RS00120 (PADK2_00120) hemF 25719..26636 (+) 918 WP_003118481.1 oxygen-dependent coproporphyrinogen oxidase -
  PADK2_RS00125 (PADK2_00125) aroE 26694..27518 (+) 825 WP_003111201.1 shikimate dehydrogenase -
  PADK2_RS00130 (PADK2_00130) - 27629..28615 (+) 987 WP_003111200.1 phospholipase C -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37703.20 Da        Isoelectric Point: 7.0742

>NTDB_id=43379 PADK2_RS00105 WP_003118479.1 22855..23943(+) (dprA) [Pseudomonas aeruginosa DK2]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPASAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEAGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=43379 PADK2_RS00105 WP_003118479.1 22855..23943(+) (dprA) [Pseudomonas aeruginosa DK2]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCAGCGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCCCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGCTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGGCG
CCACGAAGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAGCTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGGCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAACTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGATGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

43.514

100

0.445
  dprA Vibrio cholerae strain A1552

43.048

100

0.445
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

43.048

100

0.445
  dprA Legionella pneumophila strain ERS1305867

43.38

98.066

0.425
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.254

98.066

0.414
  dprA Acinetobacter baumannii D1279779

37.673

99.724

0.376
  dprA Neisseria gonorrhoeae strain FA1090

44.554

83.702

0.373
  dprA Neisseria meningitidis MC58

46.048

80.387

0.37
  dprA Neisseria meningitidis strain C311

46.048

80.387

0.37
  dprA Glaesserella parasuis strain SC1401

46.853

79.006

0.37
  dprA Neisseria gonorrhoeae MS11

44.224

83.702

0.37
  dprA Acinetobacter baumannii strain A118

38

96.685

0.367

Multiple sequence alignment