Detailed information NTG0043378

Bioinformatically predicted

Overview

• Name: tsaP
• Type: Machinery gene
• Locus tag: PADK2_RS00100
• Genome accession: NC_018080
• Coordinates: 21695..22720 (+)
• Length: 341 a.a.
• NCBI ID: WP_003097294.1
• Uniprot ID: A0A0H2ZJL6
• Organism: Pseudomonas aeruginosa DK2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 16695..27720

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PADK2_RS00075 (PADK2_00075)	-	16883..17200 (-)	318	WP_003120685.1	tetratricopeptide repeat protein	-
PADK2_RS00080 (PADK2_00080)	trkA	17349..18722 (-)	1374	WP_014833843.1	Trk system potassium transporter TrkA	-
PADK2_RS00085 (PADK2_00085)	rsmB	18750..20054 (-)	1305	WP_003118477.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
PADK2_RS00090 (PADK2_00090)	fmt	20051..20995 (-)	945	WP_003118478.1	methionyl-tRNA formyltransferase	-
PADK2_RS00095 (PADK2_00095)	def	21050..21556 (-)	507	WP_003107059.1	peptide deformylase	-
PADK2_RS00100 (PADK2_00100)	tsaP	21695..22720 (+)	1026	WP_003097294.1	LysM peptidoglycan-binding domain-containing protein	Machinery gene
PADK2_RS00105 (PADK2_00105)	dprA	22855..23943 (+)	1089	WP_003118479.1	DNA-processing protein DprA	Machinery gene
PADK2_RS00110 (PADK2_00110)	-	23984..24541 (+)	558	WP_003097300.1	L-threonylcarbamoyladenylate synthase	-
PADK2_RS00115 (PADK2_00115)	-	24551..25528 (-)	978	WP_003118480.1	NADPH:quinone reductase	-
PADK2_RS00120 (PADK2_00120)	hemF	25719..26636 (+)	918	WP_003118481.1	oxygen-dependent coproporphyrinogen oxidase	-
PADK2_RS00125 (PADK2_00125)	aroE	26694..27518 (+)	825	WP_003111201.1	shikimate dehydrogenase	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37586.01 Da
• Isoelectric Point: 9.3358

>NTDB_id=43378 PADK2_RS00100 WP_003097294.1 21695..22720(+) (tsaP) [Pseudomonas aeruginosa DK2]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide

• Length: 1026 bp

>NTDB_id=43378 PADK2_RS00100 WP_003097294.1 21695..22720(+) (tsaP) [Pseudomonas aeruginosa DK2]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCATCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCT
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

• LysM domain (LysM) (31-76)

3D structure

• AlphaFold DB: A0A0H2ZJL6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
tsaP	Acinetobacter baumannii D1279779	36.512	100	0.393