Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   HCN55_RS02115 Genome accession   NZ_CP050532
Coordinates   422111..423259 (+) Length   382 a.a.
NCBI ID   WP_003246686.1    Uniprot ID   A0AAE2V9H5
Organism   Bacillus subtilis subsp. subtilis str. SMY     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 417111..428259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCN55_RS02095 (HCN55_02095) yclH 417488..418168 (-) 681 WP_003234507.1 ABC transporter ATP-binding protein -
  HCN55_RS02100 (HCN55_02100) yclI 418184..419644 (-) 1461 WP_003234506.1 ABC transporter permease -
  HCN55_RS02105 (HCN55_02105) yclJ 419857..420540 (+) 684 WP_003246532.1 two-component system response regulator YclJ -
  HCN55_RS02110 (HCN55_02110) yclK 420527..421948 (+) 1422 WP_009969263.1 two-component system sensor histidine kinase YclK -
  HCN55_RS02115 (HCN55_02115) rapC 422111..423259 (+) 1149 WP_003246686.1 response regulator aspartate phosphatase RapC Regulator
  HCN55_RS02120 (HCN55_02120) phrC 423243..423365 (+) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  HCN55_RS02125 (HCN55_02125) yczM 423465..423554 (-) 90 WP_015482794.1 YjcZ family sporulation protein -
  HCN55_RS02130 (HCN55_02130) yczN 423636..423749 (-) 114 WP_003234495.1 YjcZ family sporulation protein -
  HCN55_RS02135 (HCN55_02135) thrD 423903..425267 (-) 1365 WP_009966541.1 aspartate kinase -
  HCN55_RS02140 (HCN55_02140) ceuB 425652..426602 (+) 951 WP_003234491.1 petrobactin ABC transporter permease YclN Machinery gene
  HCN55_RS02145 (HCN55_02145) yclO 426595..427542 (+) 948 WP_003246705.1 petrobactin ABC transporter permease YclO -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45634.68 Da        Isoelectric Point: 4.9618

>NTDB_id=433708 HCN55_RS02115 WP_003246686.1 422111..423259(+) (rapC) [Bacillus subtilis subsp. subtilis str. SMY]
MKSGVIPSSAVGQKINEWYRYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIDYFEKAVSTFESSRIVNSLPQAYFLITLIYYKQGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYLDQPNEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=433708 HCN55_RS02115 WP_003246686.1 422111..423259(+) (rapC) [Bacillus subtilis subsp. subtilis str. SMY]
ATGAAGAGTGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAGATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCAAGAAACATTGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTACGTGAATTTTTT
TCGCGGGATGTATGAATTTGATAAGCGGGAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAGCTCTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTCTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATAAAAAACGCCTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAGTGCCATTT
CGTCTTCGGGGTCAACCTGATGGATGAAAGAAATTTCGAACAAGCCGCACGCCATTTCAAATTGGCGCTCAACATGGCCC
AAGCAGAACAAAAAGCCCAGCTGGTTGGAAGAGCATACTACAATCTCGGGTTATGCTATTACAATCAAGACCTTCTAGAC
CCTGCCATTGATTACTTTGAAAAAGCGGTCTCCACATTTGAAAGCAGCAGGATCGTCAATTCTCTCCCGCAAGCCTATTT
TTTAATCACCCTGATTTATTATAAACAGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTCGAGTTTTTGCAATCCCTATATCTGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCAGTACTTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTACTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  rapF Bacillus subtilis subsp. subtilis str. 168

57.368

99.476

0.571