Detailed information    

insolico Bioinformatically predicted

Overview

Name   brsR   Type   Regulator
Locus tag   SCIM_RS09015 Genome accession   NC_018073
Coordinates   1834245..1834685 (+) Length   146 a.a.
NCBI ID   WP_014829834.1    Uniprot ID   -
Organism   Streptococcus intermedius JTH08     
Function   antagonizing the proteolysis of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1829245..1839685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS08980 - 1829278..1829517 (+) 240 WP_003077256.1 hypothetical protein -
  SCIM_RS08985 (SCIM_1615) - 1829514..1829864 (+) 351 WP_003077150.1 hypothetical protein -
  SCIM_RS08990 - 1829845..1830126 (+) 282 WP_016670425.1 hypothetical protein -
  SCIM_RS08995 (SCIM_1616) - 1830129..1830482 (+) 354 WP_003077331.1 head-tail adaptor protein -
  SCIM_RS09000 (SCIM_1617) - 1830514..1831329 (+) 816 WP_003077212.1 DnaD domain protein -
  SCIM_RS09005 (SCIM_1618) - 1831345..1832169 (+) 825 WP_003077200.1 ATP-binding protein -
  SCIM_RS09010 (SCIM_1619) - 1832900..1833325 (+) 426 WP_003077305.1 DUF1492 domain-containing protein -
  SCIM_RS09015 (SCIM_1620) brsR 1834245..1834685 (+) 441 WP_014829834.1 LytTR family DNA-binding domain-containing protein Regulator
  SCIM_RS09020 (SCIM_1621) - 1834682..1835140 (+) 459 WP_003075329.1 DUF3021 domain-containing protein -
  SCIM_RS09025 (SCIM_1622) hexA 1835281..1837839 (-) 2559 WP_003077322.1 DNA mismatch repair protein MutS Machinery gene
  SCIM_RS09030 (SCIM_1623) argR 1838002..1838442 (-) 441 WP_003075336.1 arginine repressor -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16969.75 Da        Isoelectric Point: 7.3971

>NTDB_id=43369 SCIM_RS09015 WP_014829834.1 1834245..1834685(+) (brsR) [Streptococcus intermedius JTH08]
MKVQMHIDEKFSEEKIIIEAPVLSDSVQQLLTFAQHIGKNKTIRAKKEEEIYLLNSTEIQRVYTENRQVWAETATDTYLL
GLPLYQVLELLPTDFLQISQSEIINIKHIDHLKLTGSGLIQIVMKNGQITYSSRRYLKVIKEKLQL

Nucleotide


Download         Length: 441 bp        

>NTDB_id=43369 SCIM_RS09015 WP_014829834.1 1834245..1834685(+) (brsR) [Streptococcus intermedius JTH08]
ATGAAAGTTCAAATGCATATTGACGAAAAATTTTCAGAAGAAAAAATCATTATTGAAGCACCTGTTTTGTCGGATTCCGT
TCAACAACTACTAACATTTGCTCAACATATCGGTAAAAATAAAACCATTCGAGCAAAAAAAGAGGAGGAAATTTACCTAC
TAAATAGCACGGAGATACAACGCGTCTATACTGAAAATCGGCAAGTTTGGGCCGAAACAGCAACAGACACTTATCTCTTA
GGGCTTCCACTTTATCAAGTTTTGGAATTGCTTCCCACTGATTTTCTACAGATTTCCCAATCTGAAATCATTAACATCAA
ACATATCGATCATCTGAAATTGACTGGTAGTGGTCTGATTCAGATTGTAATGAAAAACGGTCAGATAACTTATTCATCTC
GCCGTTATCTCAAAGTCATAAAGGAGAAATTACAGCTATGA

Domains

Predicted by InterProScan.

LytTr DNA-binding domain (LytTR)

(50-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  brsR Streptococcus mutans UA159

36.986

100

0.37

Multiple sequence alignment