Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   HCR02_RS11060 Genome accession   NZ_CP050505
Coordinates   2106172..2106489 (-) Length   105 a.a.
NCBI ID   WP_003697861.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain BJ16148     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2101172..2111489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCR02_RS11025 (HCR02_10960) - 2102568..2102950 (-) 383 Protein_2143 pilin -
  HCR02_RS12295 - 2103085..2103570 (-) 486 WP_125121586.1 pilin -
  HCR02_RS11040 (HCR02_10975) - 2103627..2103974 (-) 348 Protein_2145 pilin -
  HCR02_RS11045 - 2104027..2104420 (-) 394 Protein_2146 pilin -
  HCR02_RS11050 (HCR02_10990) - 2104555..2104994 (-) 440 Protein_2147 pilin -
  HCR02_RS12300 - 2105520..2106164 (-) 645 WP_269471826.1 pilin -
  HCR02_RS11060 (HCR02_11000) pilE 2106172..2106489 (-) 318 WP_003697861.1 pilin Machinery gene
  HCR02_RS11065 (HCR02_11005) - 2106819..2107010 (+) 192 WP_014580443.1 hypothetical protein -
  HCR02_RS11070 (HCR02_11010) - 2107074..2107763 (-) 690 WP_003696506.1 M48 family metallopeptidase -
  HCR02_RS11075 (HCR02_11015) - 2107760..2108503 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -
  HCR02_RS11080 (HCR02_11020) gmhB 2108533..2109096 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  HCR02_RS11085 (HCR02_11025) - 2109239..2110891 (+) 1653 WP_103195361.1 LTA synthase family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11639.16 Da        Isoelectric Point: 10.3830

>NTDB_id=433481 HCR02_RS11060 WP_003697861.1 2106172..2106489(-) (pilE) [Neisseria gonorrhoeae strain BJ16148]
MASTGVNKEIKGKKLSLWAKRQDGSVKWFCGQPVKRESNNADAVTADGTDGANGTKIETKHLPSTCRDESSAGCIETPRA
DFKHFQKISRYRILPESRQMAGKQR

Nucleotide


Download         Length: 318 bp        

>NTDB_id=433481 HCR02_RS11060 WP_003697861.1 2106172..2106489(-) (pilE) [Neisseria gonorrhoeae strain BJ16148]
ATGGCTTCAACCGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTAAGCGCGAAAGCAACAACGCCGACGCCGTCACCGCCGACGGCACCGACGGCGCCAACG
GCACCAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCATAGAAACACCACGCGCC
GATTTCAAACACTTCCAAAAAATCAGCCGTTACCGAATATTACCTGAATCACGGCAAATGGCCGGAAAACAACGGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.611

68.571

0.505
  pilE Neisseria gonorrhoeae MS11

60.563

67.619

0.41