Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   HCR02_RS10120 Genome accession   NZ_CP050505
Coordinates   1931952..1932347 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain BJ16148     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1926952..1937347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCR02_RS10100 (HCR02_10030) rfbC 1927027..1927584 (+) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  HCR02_RS10105 (HCR02_10035) - 1927628..1929646 (-) 2019 WP_003690255.1 oligopeptide transporter, OPT family -
  HCR02_RS10110 (HCR02_10040) dnaJ 1929841..1930962 (-) 1122 WP_003690173.1 molecular chaperone DnaJ -
  HCR02_RS10115 (HCR02_10045) - 1931096..1931545 (+) 450 WP_017147004.1 transposase -
  HCR02_RS10120 (HCR02_10050) comE 1931952..1932347 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  HCR02_RS12110 - 1932449..1932568 (-) 120 Protein_1972 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=433476 HCR02_RS10120 WP_003703428.1 1931952..1932347(-) (comE) [Neisseria gonorrhoeae strain BJ16148]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=433476 HCR02_RS10120 WP_003703428.1 1931952..1932347(-) (comE) [Neisseria gonorrhoeae strain BJ16148]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1