Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   HCR02_RS02335 Genome accession   NZ_CP050505
Coordinates   449357..449968 (+) Length   203 a.a.
NCBI ID   WP_003687918.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain BJ16148     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444357..454968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCR02_RS02310 (HCR02_02305) - 444787..445368 (-) 582 WP_047923823.1 superoxide dismutase -
  HCR02_RS02315 (HCR02_02310) dnaB 445532..446938 (+) 1407 WP_047917169.1 replicative DNA helicase -
  HCR02_RS02320 (HCR02_02315) pilH 447093..447758 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HCR02_RS02325 (HCR02_02320) pilV 447790..448401 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  HCR02_RS02330 (HCR02_02325) pilJ 448398..449378 (+) 981 WP_010951046.1 PilW family protein Machinery gene
  HCR02_RS02335 (HCR02_02330) pilK 449357..449968 (+) 612 WP_003687918.1 pilus assembly protein Machinery gene
  HCR02_RS02340 (HCR02_02335) pilL 449970..450443 (+) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  HCR02_RS02345 (HCR02_02340) - 450513..450821 (-) 309 WP_010951048.1 AzlD family protein -
  HCR02_RS02350 (HCR02_02345) - 450818..451525 (-) 708 Protein_463 AzlC family ABC transporter permease -
  HCR02_RS02355 (HCR02_02350) dut 451691..452143 (+) 453 WP_103195211.1 dUTP diphosphatase -
  HCR02_RS02360 (HCR02_02355) dapC 452221..453408 (+) 1188 WP_047949582.1 succinyldiaminopimelate transaminase -
  HCR02_RS02365 (HCR02_02360) yaaA 453719..454498 (+) 780 WP_003706583.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22153.94 Da        Isoelectric Point: 5.3780

>NTDB_id=433452 HCR02_RS02335 WP_003687918.1 449357..449968(+) (pilK) [Neisseria gonorrhoeae strain BJ16148]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEVFGNIVVQGTPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTGNVSKMP
RYIIEYLGEKNNQNIYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=433452 HCR02_RS02335 WP_003687918.1 449357..449968(+) (pilK) [Neisseria gonorrhoeae strain BJ16148]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGTTTTTGGCAATATCGTGGTGCAAGGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGTTATATTATCGAATATTTGGGCGAGAAGAATAACCAAAATATTTACAGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTGCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

100

100

1