Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   HCR02_RS00500 Genome accession   NZ_CP050505
Coordinates   107294..107893 (-) Length   199 a.a.
NCBI ID   WP_047926976.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain BJ16148     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 102294..112893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCR02_RS00485 (HCR02_00485) pilQ 103869..106064 (-) 2196 WP_003687350.1 type IV pilus secretin PilQ Machinery gene
  HCR02_RS00490 (HCR02_00490) pilP 106083..106628 (-) 546 WP_003692554.1 pilus assembly protein PilP Machinery gene
  HCR02_RS00495 (HCR02_00495) pilO 106646..107293 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  HCR02_RS00500 (HCR02_00500) pilN 107294..107893 (-) 600 WP_047926976.1 PilN domain-containing protein Machinery gene
  HCR02_RS00505 (HCR02_00505) - 107896..109011 (-) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  HCR02_RS00510 (HCR02_00510) - 109163..111559 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -
  HCR02_RS00515 (HCR02_00515) yihA 111680..112309 (-) 630 WP_003687358.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22283.64 Da        Isoelectric Point: 9.7317

>NTDB_id=433440 HCR02_RS00500 WP_047926976.1 107294..107893(-) (pilN) [Neisseria gonorrhoeae strain BJ16148]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGVVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSEIQKLKQE
KDAFLIKKNKIEELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=433440 HCR02_RS00500 WP_047926976.1 107294..107893(-) (pilN) [Neisseria gonorrhoeae strain BJ16148]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGCGTCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGAGGAGCTCCAGATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

97.487

100

0.975