Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   HCR02_RS00490 Genome accession   NZ_CP050505
Coordinates   106083..106628 (-) Length   181 a.a.
NCBI ID   WP_003692554.1    Uniprot ID   Q5FAD1
Organism   Neisseria gonorrhoeae strain BJ16148     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 101083..111628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCR02_RS00480 (HCR02_00480) - 102089..102601 (-) 513 WP_003687349.1 shikimate kinase -
  HCR02_RS00485 (HCR02_00485) pilQ 103869..106064 (-) 2196 WP_003687350.1 type IV pilus secretin PilQ Machinery gene
  HCR02_RS00490 (HCR02_00490) pilP 106083..106628 (-) 546 WP_003692554.1 pilus assembly protein PilP Machinery gene
  HCR02_RS00495 (HCR02_00495) pilO 106646..107293 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  HCR02_RS00500 (HCR02_00500) pilN 107294..107893 (-) 600 WP_047926976.1 PilN domain-containing protein Machinery gene
  HCR02_RS00505 (HCR02_00505) - 107896..109011 (-) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  HCR02_RS00510 (HCR02_00510) - 109163..111559 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20094.62 Da        Isoelectric Point: 4.7529

>NTDB_id=433439 HCR02_RS00490 WP_003692554.1 106083..106628(-) (pilP) [Neisseria gonorrhoeae strain BJ16148]
MKHYALLISFLALSACSQNSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETAKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIILNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=433439 HCR02_RS00490 WP_003692554.1 106083..106628(-) (pilP) [Neisseria gonorrhoeae strain BJ16148]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAAATTCTGAAGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGCCAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCCGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCATCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5FAD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

98.343

100

0.983