Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HCJ88_RS13320 Genome accession   NZ_CP050500
Coordinates   2727431..2728027 (+) Length   198 a.a.
NCBI ID   WP_003568462.1    Uniprot ID   A0A0C9PXZ6
Organism   Lacticaseibacillus paracasei strain NFFJ04     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2722431..2733027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCJ88_RS13300 (HCJ88_13545) gyrA 2722808..2725429 (+) 2622 WP_003581640.1 DNA gyrase subunit A -
  HCJ88_RS13305 (HCJ88_13550) deoC 2725534..2726238 (-) 705 WP_003568456.1 deoxyribose-phosphate aldolase -
  HCJ88_RS13310 (HCJ88_13555) ssb 2726545..2726976 (+) 432 WP_003568458.1 single-stranded DNA-binding protein -
  HCJ88_RS13315 (HCJ88_13560) rpsF 2727104..2727400 (+) 297 WP_003568460.1 30S ribosomal protein S6 -
  HCJ88_RS13320 (HCJ88_13565) ssb 2727431..2728027 (+) 597 WP_003568462.1 single-stranded DNA-binding protein Machinery gene
  HCJ88_RS13325 (HCJ88_13570) rpsR 2728114..2728350 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  HCJ88_RS13330 (HCJ88_13575) - 2728792..2730270 (+) 1479 WP_003568469.1 cytochrome ubiquinol oxidase subunit I -
  HCJ88_RS13335 (HCJ88_13580) cydB 2730263..2731282 (+) 1020 WP_003568540.1 cytochrome d ubiquinol oxidase subunit II -
  HCJ88_RS13340 (HCJ88_13585) - 2731309..2731503 (+) 195 WP_016369325.1 hypothetical protein -
  HCJ88_RS13345 (HCJ88_13590) - 2731576..2732169 (-) 594 WP_016369326.1 TMEM175 family protein -
  HCJ88_RS13350 (HCJ88_13595) - 2732566..2732961 (-) 396 WP_003584064.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21138.87 Da        Isoelectric Point: 4.9056

>NTDB_id=433427 HCJ88_RS13320 WP_003568462.1 2727431..2728027(+) (ssb) [Lacticaseibacillus paracasei strain NFFJ04]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=433427 HCJ88_RS13320 WP_003568462.1 2727431..2728027(+) (ssb) [Lacticaseibacillus paracasei strain NFFJ04]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAAGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C9PXZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.485

100

0.485