Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   SCIM_RS06490 Genome accession   NC_018073
Coordinates   1346290..1347948 (-) Length   552 a.a.
NCBI ID   WP_003071995.1    Uniprot ID   -
Organism   Streptococcus intermedius JTH08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1341290..1352948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS06465 (SCIM_1169) ceuB 1341530..1342483 (+) 954 WP_003072006.1 ABC transporter permease Machinery gene
  SCIM_RS06470 (SCIM_1170) - 1342476..1343438 (+) 963 WP_003076294.1 iron chelate uptake ABC transporter family permease subunit -
  SCIM_RS06475 (SCIM_1171) - 1343439..1344191 (+) 753 WP_003072001.1 ABC transporter ATP-binding protein -
  SCIM_RS06480 (SCIM_1172) - 1344213..1345184 (+) 972 WP_003076389.1 siderophore ABC transporter substrate-binding protein -
  SCIM_RS06485 (SCIM_1173) - 1345257..1345979 (-) 723 WP_003076446.1 metallophosphoesterase -
  SCIM_RS06490 (SCIM_1174) recN 1346290..1347948 (-) 1659 WP_003071995.1 DNA repair protein RecN Machinery gene
  SCIM_RS06495 (SCIM_1175) - 1347956..1348387 (-) 432 WP_003076987.1 arginine repressor -
  SCIM_RS06500 (SCIM_1176) - 1348380..1349195 (-) 816 WP_003076365.1 TlyA family RNA methyltransferase -
  SCIM_RS06505 (SCIM_1177) - 1349161..1350063 (-) 903 WP_003076895.1 polyprenyl synthetase family protein -
  SCIM_RS06510 - 1350060..1350272 (-) 213 WP_003068213.1 exodeoxyribonuclease VII small subunit -
  SCIM_RS06515 (SCIM_1178) xseA 1350250..1351590 (-) 1341 WP_003076702.1 exodeoxyribonuclease VII large subunit -
  SCIM_RS06520 (SCIM_1179) - 1351872..1352333 (+) 462 WP_003076515.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62787.16 Da        Isoelectric Point: 4.5570

>NTDB_id=43333 SCIM_RS06490 WP_003071995.1 1346290..1347948(-) (recN) [Streptococcus intermedius JTH08]
MLLEISIKNFAIIEEVSLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSRATTDVIRHGAPKAEIEGMFAIEQSKALIEIF
EQQGLDMTDELIIRREIFQNGRSISRINGQMVNLSVLRSVGQHLVDIHGQHDQEELMRSQLHIAMLDEFGDEVFFKLKAD
YQQTFDQYRQLRKQVITIQKNQEENKARIDMLEYQIAEIEAANLRAGEDLALNQERDKLLNHKQIADTLTNVYAMLDNEE
FSSLSNIRAAMNDMEAIEEYDVTYKEIATSLSESYYVLEDATKRLEDILDNMDFDGDRLLEIERRLDLIYSITRKYGGHV
DDVLAYLEQISKEYALLTGKNLSSNDLDQELRKLEKDLVSLAGRLSRERHELAQQLEAEIQQELKDLYMEKANFRVQFTK
GKFSREGNEHVEFYISTNPGEDYKPLVKIASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SNGQVLAISHLPQVIAIADYQFFIEKISDEYSTVSTVRLLSDEERIEEIAKMLAGENVTEAALTQARELLKQ

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=43333 SCIM_RS06490 WP_003071995.1 1346290..1347948(-) (recN) [Streptococcus intermedius JTH08]
ATGTTACTTGAAATTTCCATTAAAAATTTTGCAATTATTGAAGAGGTTTCTCTCAATTTTGAGCAAGGCATGACCGTTTT
GACAGGTGAAACGGGTGCTGGGAAGTCTATTATCATTGATGCTATGAATATGATGTTGGGAAGCCGAGCAACAACAGATG
TGATTCGTCATGGCGCGCCAAAAGCTGAGATTGAAGGAATGTTTGCGATTGAACAGAGTAAAGCTTTGATTGAAATCTTT
GAGCAGCAAGGGCTTGATATGACAGATGAGTTGATTATTCGACGAGAAATTTTCCAAAACGGTCGCAGTATCAGCCGTAT
TAATGGTCAAATGGTCAATTTATCCGTTTTGCGATCGGTTGGACAGCATTTGGTGGATATTCATGGTCAGCACGACCAAG
AAGAGTTGATGCGTTCCCAGTTACATATTGCTATGTTGGACGAGTTTGGAGATGAAGTATTTTTTAAACTCAAAGCGGAT
TATCAGCAAACTTTTGATCAGTATCGTCAGTTGCGTAAGCAAGTCATAACGATTCAGAAGAATCAAGAAGAAAATAAGGC
GCGAATTGATATGCTGGAATATCAGATTGCAGAGATTGAGGCGGCTAATTTAAGAGCTGGCGAAGATTTGGCATTAAACC
AAGAACGCGATAAATTACTCAACCATAAGCAGATTGCAGACACTTTGACAAATGTCTACGCTATGCTGGATAATGAGGAA
TTTTCGAGTTTATCTAATATTCGAGCTGCCATGAATGATATGGAAGCTATCGAAGAGTACGATGTTACTTACAAAGAAAT
TGCGACTAGTCTTTCTGAGTCTTACTATGTACTGGAAGACGCAACAAAGCGTTTGGAAGACATTCTAGATAACATGGATT
TTGATGGTGATCGTCTCTTAGAAATTGAAAGGCGTCTAGATCTGATTTATAGCATTACTCGTAAATACGGTGGGCATGTG
GATGATGTGTTAGCTTATTTAGAGCAAATTTCTAAAGAATATGCGCTTCTGACTGGAAAGAATCTCTCATCAAATGATTT
GGATCAAGAGCTGAGAAAGCTAGAGAAAGATTTGGTCTCTCTAGCAGGTCGTCTGAGTCGGGAACGGCACGAATTAGCCC
AGCAATTAGAAGCAGAGATTCAGCAAGAATTAAAAGATCTCTATATGGAAAAGGCGAATTTTCGAGTTCAATTTACCAAA
GGAAAGTTTAGCCGCGAGGGAAATGAGCATGTTGAATTTTACATTTCGACTAATCCGGGCGAAGATTACAAACCGCTCGT
TAAGATTGCCTCCGGTGGTGAATTGTCACGTTTGATGTTAGCAATCAAGTCTGCTTTTTCTCGTAAAGAAGGCAAGACAA
GCATTGTTTTTGATGAGGTAGACACAGGCGTATCTGGACGTGTTGCGCAAGCTATTGCTCAGAAAATTCATAAAATTGGC
TCCAATGGACAAGTTCTTGCCATCTCGCACCTGCCACAAGTGATTGCTATTGCAGACTATCAATTTTTCATCGAGAAAAT
ATCAGATGAATATTCAACCGTTTCAACAGTTCGCTTGTTGTCTGATGAAGAGCGTATCGAAGAGATTGCTAAAATGTTAG
CGGGTGAAAATGTGACTGAAGCAGCTCTCACTCAGGCTAGAGAACTATTGAAACAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.035

100

0.455