Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   HB763_RS17175 Genome accession   NZ_CP050476
Coordinates   274837..276882 (-) Length   681 a.a.
NCBI ID   WP_255987047.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC012     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 269837..281882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB763_RS17165 (HB763_17180) ylqF 272204..273139 (+) 936 WP_255903264.1 ribosome biogenesis GTPase YlqF -
  HB763_RS17170 (HB763_17185) cqsA 273429..274730 (+) 1302 WP_255986541.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  HB763_RS17175 (HB763_17190) cqsS 274837..276882 (-) 2046 WP_255987047.1 response regulator Regulator
  HB763_RS17180 (HB763_17195) - 277186..277803 (+) 618 WP_255986542.1 HAD family phosphatase -
  HB763_RS17185 (HB763_17200) - 278143..278691 (-) 549 WP_005426812.1 GNAT family N-acetyltransferase -
  HB763_RS17190 (HB763_17205) - 278985..280109 (+) 1125 WP_038862894.1 fatty acid desaturase -
  HB763_RS17195 (HB763_17210) dcuC 280492..281859 (+) 1368 WP_255903257.1 anaerobic C4-dicarboxylate transporter DcuC -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 77766.63 Da        Isoelectric Point: 5.5037

>NTDB_id=433180 HB763_RS17175 WP_255987047.1 274837..276882(-) (cqsS) [Vibrio campbellii strain LJC012]
MDAIRKVYQYAEPNLSLVGWMGFIGFPIYYIVWEFMFPQPYENLPLRILCSILFFGIIYRNRTPFEWRGFLPAYYQVVTT
LCLPCFFFYMLLMNNWSNVWVMSFMSAIFLHILLVHITSVMFVQTFVGIGLATFFAWVAQGFHLELTMDWTHVPIFLFIY
LFGNLFYFRNQVEHEAKVSIAKSFGAGIAHEMRNPLSGLLTSIDVIQSVLPNPKEGKKEQYTLSDEDVTLLREVSSDAMK
IIHSGNETIDLLLTSIDENRVSRSTFKKHSAQSVVESAIESFSYKRSTDRFAISLDVRSEFDFLGSDTLLKYVMYNLFKN
AFHHRSSEDFHIHVTMYSGEFANQIVVTDNGSGIAPEVLQSIFQDFYTTGRSGNYGLGLPFCKKVMRSFGGDIRCQSEVG
EWSQFTMTFPTIGSSAVKEIKSELTKLKTILFVSEQNILVSKVTDIARFMGFELTVLDVPAVLKKKEYEFEFDLILIDME
SLDARGSHIDKVESLLSFTEARIVYMFEHHPIQRARSVSFEPIWVETQAWLLNTRATIDRLLYDANYVVPSMPAKPLDST
NKRTIMVVDDNESLRKFTAMLLEKQGFEVIQTEDGLQAINALNENNVDLILMDIEMPVMDGVEASRQIRGSNKAYASVPI
IAHTGDSSPITLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=433180 HB763_RS17175 WP_255987047.1 274837..276882(-) (cqsS) [Vibrio campbellii strain LJC012]
ATGGACGCGATTCGCAAAGTATATCAGTACGCAGAACCCAACCTTAGCCTCGTAGGATGGATGGGCTTCATAGGCTTTCC
TATTTACTACATCGTTTGGGAGTTCATGTTCCCGCAGCCATACGAAAACCTACCGCTTCGTATTCTTTGCTCAATATTAT
TCTTCGGCATCATTTATCGTAATCGTACGCCATTTGAGTGGCGTGGGTTCTTACCCGCCTATTATCAAGTGGTCACAACG
CTCTGCTTACCTTGCTTCTTCTTTTACATGTTGCTGATGAACAATTGGTCGAATGTTTGGGTGATGTCGTTTATGTCGGC
GATTTTTTTGCACATACTGCTCGTGCATATCACATCGGTGATGTTTGTTCAGACATTTGTGGGAATTGGTCTTGCGACGT
TTTTTGCTTGGGTAGCACAGGGGTTTCACCTCGAACTCACCATGGATTGGACGCACGTACCGATCTTCTTGTTTATTTAT
CTCTTTGGTAACTTGTTCTACTTCCGAAACCAGGTAGAACATGAAGCAAAAGTCTCAATCGCAAAGTCTTTTGGGGCGGG
TATCGCCCATGAAATGCGAAACCCACTCAGCGGTTTATTAACTTCTATCGATGTCATTCAATCCGTGTTGCCAAATCCGA
AAGAGGGCAAGAAAGAGCAGTACACGTTAAGTGATGAAGATGTGACACTGTTACGAGAAGTCAGCAGTGACGCAATGAAG
ATCATTCATTCCGGAAACGAAACCATTGATTTGCTTCTTACTTCAATTGATGAGAACCGTGTTTCTCGCTCGACATTTAA
AAAACACTCTGCACAATCTGTCGTTGAGAGTGCGATTGAAAGTTTCAGTTACAAACGATCGACAGACCGTTTTGCTATCT
CCTTGGATGTAAGAAGTGAGTTCGATTTCTTGGGCAGCGATACATTGCTTAAGTATGTGATGTACAACTTGTTCAAGAAC
GCCTTCCACCACCGTAGTTCAGAAGACTTTCACATACACGTCACCATGTACAGTGGTGAATTTGCCAACCAAATTGTGGT
GACTGATAACGGTTCGGGCATTGCGCCAGAAGTTCTTCAAAGTATTTTCCAAGATTTCTACACTACGGGTAGGTCAGGAA
ACTACGGCCTTGGATTGCCTTTCTGTAAGAAAGTGATGCGTTCATTTGGCGGTGATATTCGTTGCCAATCAGAAGTCGGC
GAGTGGTCTCAGTTCACGATGACTTTCCCTACGATTGGCTCAAGCGCAGTCAAAGAGATTAAGAGTGAGCTAACCAAGCT
AAAAACGATTTTGTTTGTGAGTGAGCAAAACATCTTAGTTTCGAAAGTGACGGACATTGCTCGTTTTATGGGATTCGAAC
TCACGGTTCTCGATGTTCCTGCGGTTCTTAAAAAGAAAGAATACGAGTTCGAGTTTGATTTGATCCTGATCGACATGGAG
AGTTTAGACGCCCGTGGTAGCCATATAGATAAGGTTGAGTCATTACTGTCGTTCACTGAAGCTCGCATTGTTTACATGTT
TGAGCACCATCCAATTCAAAGAGCGAGAAGCGTTTCTTTTGAACCTATTTGGGTAGAGACACAAGCCTGGCTTCTGAATA
CTCGAGCGACCATCGACCGTTTACTGTATGACGCTAATTATGTTGTTCCATCGATGCCAGCGAAGCCGCTCGACTCAACA
AACAAGCGAACCATTATGGTGGTTGACGACAATGAGTCTCTACGCAAGTTTACGGCCATGCTGCTTGAGAAGCAGGGTTT
TGAAGTGATCCAAACCGAGGATGGGCTGCAGGCAATCAACGCATTGAATGAGAACAATGTTGACTTAATCCTAATGGACA
TCGAAATGCCGGTGATGGATGGTGTAGAAGCATCTCGTCAAATCAGAGGTTCAAATAAGGCGTATGCTTCGGTGCCTATT
ATTGCGCATACTGGTGATAGCTCACCGATAACACTCGACAAGATTGGTTCATCTGGCATGTCGGATTTCATCGTTAAACC
TGCGGATAAGAACAGGTTGTTCGACAAGATTGCGAACTGGATTTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(308-410)

Response regulator receiver domain (Response_reg)

(565-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

47.883

100

0.482